LOC_Os07g15460

Expression Profile

RGAP LOCUS ID LOC_Os07g15460
RAP-DB ID Os07g0258400
Function metal transporter Nramp6, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 5

2) CELLO Prediction
localization PlasmaMembrane
score 4.892

3) NUCPRED Prediction
localization Non Nuclear
score 0.01

4) Y-Loc Prediction
localization Cytoplasm
score 97
confidence value 0.53
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsNRAMP1
Function assigned as per literature OsNRAMP1 is an important protein in high-level Cd accumulation in rice.
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment onion epidermal cells and rice protoplast
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 21697258
Reference of localization https://academic.oup.com/jxb/article/62/14/4843/476936
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.073
NLS score -0.47
Protein Sequence >LOC_Os07g15460.1 protein
MGVTKAEAVAGDGGKVVDDIEALADLRKEPAWKRFLSHIGPGFMVCLAYLDPGNMETDLQAGANHKYELLWVILIGLIFALIIQSLSANLGVVTGRHLAE
LCKTEYPVWVKTCLWLLAELAVIASDIPEVIGTGFAFNLLFHIPVWTGVLIAGSSTLLLLGLQRYGVRKLEVVVALLVFVMAGCFFVEMSIVKPPVNEVL
QGLFIPRLSGPGATGDSIALLGALVMPHNLFLHSALVLSRNTPASAKGMKDVCRFFLFESGIALFVALLVNIAIISVSGTVCNATNLSPEDAVKCSDLTL
DSSSFLLRNVLGKSSATVYGVALLASGQSSTITGTYAGQYVMQGFLDIKMKQWLRNLMTRSIAIVPSLIVSIIGGSSGAGRLIVIASMILSFELPFALIP
LLKFSSSSNKMGENKNSIYIVGFSWVLGFVIIGINIYFLSTKLVGWILHNALPTFANVLIGIVLFPLMLLYVVAVIYLTFRKDTVKFVSRRELQAGDDTE
KAQVATCVADEHSKEPPV

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Biological Process
GO Term cellular process
3
GO Category Molecular Function
GO Term transporter activity
4
GO Category Cellular comBiological Processonent
GO Term plasma membrane
5
GO Category Biological Process
GO Term biological_process
6
GO Category Biological Process
GO Term cellular homeostasis
Presence of Splice variants YES