| RGAP LOCUS ID |
LOC_Os07g13170 |
| RAP-DB ID |
Os07g0235800 |
| Function |
AP2 domain containing protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
14 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
3.745 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.39 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
100 |
| confidence value |
0.98 |
| Number Of Software Predicting Nucleus |
3 |
| Seed Specific |
No |
| Transcription factor category |
AP2-EREBP |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
SNB|SSH1 |
| Function assigned as per literature |
SNB affects the phase transition of spikelet meristems, the pattern formation of floral organs and spikelet meristem determinancy |
| Subcellular localization as per literature |
nucleus |
| Cells used for localization experiment |
Rice mesophyll protoplasts |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
17144896 |
| Reference of localization |
https://onlinelibrary.wiley.com/doi/full/10.1111/j.1365-313X.2006.02941.x |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.101 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os07g13170.2 protein
MVLDLNVESPGGSAATSSSSTPPPPPDGGGGGYFRFDLLGGSPDEDGCSSPVMTRQLFPSPSAVVALAGDGSSTPPLTMPMPAAAGEGPWPRRAADLGVA
QSQRSPAGGKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLNDYEDDLKQMRNWTKEEFVHI
LRRQSTGFARGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEIEAARAYDRAAIRFNGREAVTNFDPSSYDGDVLPETDNEVVDGDIIDLNLRIS
QPNVHELKSDGTLTGFQLNCDSPEASSSVVTQPISPQWPVLPQGTSMSQHPHLYASPCPGFFVNLREVPMEKRPELGPQSFPTSWSWQMQGSPLPLLPTA
ASSGFSTGTVADAARSPSSRPHPFPGHHQFYFPPTA |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
anatomical structure morphogenesis |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
multicellular organismal development |
|
| 3 |
| GO Category |
Molecular Function |
| GO Term |
DNA binding |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 7 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
reproduction |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
post-embryonic development |
|
| Presence of Splice variants |
YES |
