LOC_Os07g12890

Expression Profile

RGAP LOCUS ID LOC_Os07g12890
RAP-DB ID Os07g0232800
Function metal cation transporter, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 7

2) CELLO Prediction
localization PlasmaMembrane
score 2.261

3) NUCPRED Prediction
localization Non Nuclear
score 0

4) Y-Loc Prediction
localization Secreted pathw
score
confidence value 0.14
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsZIP8
Function assigned as per literature OsZIP8 is a zinc transporter that functions in Zn uptake and distribution
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment rice roots
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 20496122
Reference of localization http://www.molcells.org/journal/view.html?year=2010&volume=29&number=6&spage=551
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.069
NLS score -0.47
Protein Sequence >LOC_Os07g12890.1 protein
MRTNTTATVLLAAAVALLLATAARGDGGDGGCGKEDAAAGRDRARARGLKIAAFFSILVCGALGCGLPSLGRHVPALRPDGDVFFLVKAFAAGVILATGF
IHILPDAFDNLTDDCLPAGGPWKEFPFAGFGAMVGAIGTLVVDTLATGYFTRALSKKDAATAAAVADEEKQSAAATQQHNHHHNHHVVGDGGGGGEEHEG
QVHVHTHATHGHAHGSSALVAAVGEDDKETTLRHRVISQVLELGIVVHSVIIGISLGASQNPETIKPLVVALSFHQMFEGMGLGGCIVQAKFKVRSIVTM
VLFFCLTTPVGIAVGVGISSVYNESSPTALVVEGILNSVAAGILIYMALVDLLAEDFMNPRVQSKGKLQLGINLAMLAGAGLMSMLAKWA

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cell
2
GO Category Cellular comBiological Processonent
GO Term membrane
3
GO Category Molecular Function
GO Term transporter activity
4
GO Category Biological Process
GO Term transport
5
GO Category Biological Process
GO Term cellular process
Presence of Splice variants YES