LOC_Os07g10690

Expression Profile

RGAP LOCUS ID LOC_Os07g10690
RAP-DB ID Os07g0207700
Function NLI interacting factor-like phosphatase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 5

2) CELLO Prediction
localization Nuclear
score 4.184

3) NUCPRED Prediction
localization Nuclear
score 0.88

4) Y-Loc Prediction
localization Mitochondrion
score
confidence value 0.5
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCPL1|sh-h
Function assigned as per literature enhances the development of the abscission layer and seed shattering
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice protoplast
NUCLEAR or Not Nuclear NUCLEAR
PMID 19807881
Reference of localization https://onlinelibrary.wiley.com/doi/full/10.1111/j.1365-313X.2009.04039.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 2
Number of Bipartite 1
Basic residues % 0.121
NLS score 1.36
Protein Sequence >LOC_Os07g10690.1 protein
MQTRKKGATKNALGDPASTKTSRQPRRAAQAAASEKKVNDLITSSAKKKKSVGAPSKKNRASKGGRKLISACDAANSENEVSQVVSGIPHDQKQSDDNVD
GRPCNSIFSPAYHLQKECGASNFAKGLEHKGDTLGSVSSVEERTTHAQGRKEVTTSRSESTSHAVKTCVGSDHHTLNAQSAFCNTPLEEDEFSELGNLSS
EVSAIYLAMQQSKLECIDEHSQDSISTEGYVDPEDTEEYDDFDPYAFIKDLPDLSLVVPKFRPVLLPKQTRSCPTTTLVLDLDETLVHSTLEPCEDADFA
FPVYFNFREHTIYVRCRPYLKEFLERVANLFETIIFTASQSIYAEQLLNVLDPKRKLFRHRVYRDSCVYVEGNYLKDLTVLGRDLTRIMIVDNSPQAFGF
QLDNGIPIESWFDDPNDQELLKLLPFLESLVGVEDVRPYIARKFNLREKVATASSLSMDLQM

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term protein modification process
3
GO Category Molecular Function
GO Term hydrolase activity
4
GO Category Cellular comBiological Processonent
GO Term intracellular
5
GO Category Cellular comBiological Processonent
GO Term cytoplasm
Presence of Splice variants YES