| RGAP LOCUS ID |
LOC_Os07g09000 |
| RAP-DB ID |
Os07g0187700 |
| Function |
WD domain, G-beta repeat domain containing protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
5 |
2) CELLO
Prediction
|
| localization |
Cytoplasmic |
| score |
1.626 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.08 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
4 |
| confidence value |
0.06 |
| Number Of Software Predicting Nucleus |
1 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsPHF1 |
| Function assigned as per literature |
OsPHF1 is required for efficient low- and high-affinity Pi transporters targeting plasma membrane in rice, and determines the Pi uptake and translocation of Pi in rice plant |
| Subcellular localization as per literature |
Plasma membrane |
| Cells used for localization experiment |
Rice protoplast |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
21753117 |
| Reference of localization |
http://www.plantphysiol.org/content/157/1/269.long |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.119 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os07g09000.1 protein
MAGGGGGEGKVACAAWIRRREEKEKATRVFAAYGRAGSPPAVEVLGFDSKECSLSEPLARAELGEEPGDAPRGITVHPSGDELVCATAKGCRLFKLIFEE
FTVRLISRDAPPLESVGPQKCLAFSTDGSKFAIGGEDGHLRIFHWPSMNVLLDEPKAHKSFRDMDISLDSEFLVSTSTDGSARIWKIDEGVPLVNLTRSA
DEKIECCRFSRDGMKPFLFCTVAKGNKVVTVVWNISDWSRIGYKRLLGKPISTLSVSMDGKYLALGSHDGDFCAVDVKKMDVSHWSKKVHLGSPVSSIEF
CPTERAVISTSHQWGAELTKLNVPADWKEWQVWLILLSLFLVSAILFYMFYERSDSFWNFPMGQHQPAKPWSVMKESPPVPEDQNPW |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
transport |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
response to extracellular stimulus |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
cell communication |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 5 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
endoplasmic reticulum |
|
| 6 |
| GO Category |
Molecular Function |
| GO Term |
nucleotide binding |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 8 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plasma membrane |
|
| Presence of Splice variants |
No |
