LOC_Os07g08840

Expression Profile

RGAP LOCUS ID LOC_Os07g08840
RAP-DB ID Os07g0186000
Function thioredoxin, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 10

2) CELLO Prediction
localization Cytoplasmic
score 3.56

3) NUCPRED Prediction
localization Non Nuclear
score 0

4) Y-Loc Prediction
localization Cytoplasm
score 87
confidence value 0.42
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsTrx23|OsTRXh1
Function assigned as per literature OsTRXh1 reveals a cross-talk between Pi homeostasis and redox status in rice.
Subcellular localization as per literature Cytoplasm and nucleus
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 27895204
Reference of localization http://www.plantphysiol.org/content/173/1/812.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.123
NLS score -0.47
Protein Sequence >LOC_Os07g08840.1 protein
MAAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGA
RKDDLQNTIVKHVGATAASASA

GO Analysis
1
GO Category Molecular Function
GO Term catalytic activity
2
GO Category Cellular comBiological Processonent
GO Term cytosol
3
GO Category Biological Process
GO Term metabolic process
4
GO Category Biological Process
GO Term cellular homeostasis
Presence of Splice variants YES