LOC_Os07g08729
| RGAP LOCUS ID | LOC_Os07g08729 |
| RAP-DB ID | Os07g0184900 |
| Function | ATP-dependent DNA helicase 2 subunit 1, putative, expressed |
Sub-cellular Localization Predictions |
|
1) WoLF-PSORT Prediction |
|
| localization | cyto |
| score | 8 |
2) CELLO Prediction |
|
| localization | Nuclear |
| score | 2.049 |
3) NUCPRED Prediction |
|
| localization | Non Nuclear |
| score | 0.69 |
4) Y-Loc Prediction |
|
| localization | Nuclear |
| score | 99.97 |
| confidence value | 0.99 |
| Number Of Software Predicting Nucleus | 2 |
| Seed Specific | No |
| Transcription factor category | |
Experimental evidence for subcellular localization |
|
| Published gene name (updated 1 January 2020) | OsKu70 |
| Function assigned as per literature | OsKu70 plays a critical role in genomic stability |
| Subcellular localization as per literature | Nucleus when interacted with OsKu80 |
| Cells used for localization experiment | Tobacco leaves |
| NUCLEAR or Not Nuclear | NUCLEAR |
| PMID | 26590017 |
| Reference of localization | https://www.sciencedirect.com/science/article/pii/S0006291X15309141 |
| Is Subcellular localization evidence by author available ? | No |
Sequence Analysis |
|
| Number of PAT4 | 2 |
| Number of PAT7 | 0 |
| Number of Bipartite | 0 |
| Basic residues % | 0.128 |
| NLS score | 0.15 |
| Protein Sequence | >LOC_Os07g08729.1 protein MDLDPEGLFRDDSDEDDDNVQEREANKEMVVYLIDASPKMFTPATKADEKEETHFHTIVNCITHALKTQIIGRSYDEVAICFFNTKEKKNLQELAGVYVY NVTEREPLDRPDARLIKEFSCIEDSFMSNIGSRYGITSGSRENTLYNALWVAQALLRKGSVKTVSKRIVIFTNEDDPFGGLTGAVKTDMIRTTIQRARDA QDLGLSIELLPLSRPDEEFNMSLFYADLIGLEGDEIVDYLPSSGEKLEDMTNQLKKRMMKKRKVKTLAFAITNDVCIEVNTYALIRSTTPGAITWLDSIS NLPLKAERSFICNDTGALIQDPQKRFQVYNDKIVKFSTRELSDVKRVSSHHLRLLGFKPLDYLKDYHNLRPSTFIYPSDEQIFGSTRVFVALHSSMRRLG RFALAFYGNPTRPQLVALIAQEEVTSAGGQIEPPGIHMIYLPYSDDVRYPEEVHLTSDDAPRATDEQIKKASNLLRRIDLKNFSVCQFSNPALQRHYGIL EALALGEDEMPDVKDETLPDEEGLARPVVVKAVEEFKASVYGENYDQEEAEAAAAKAGASKKRKALTDAAAEKSAAHNWAELADTGKLKDMTVVDLKSYL SAHGLPVSGKKEALVSRILTHLGK |
GO Analysis |
|
| Presence of Splice variants | No |