LOC_Os07g08420

Expression Profile

RGAP LOCUS ID LOC_Os07g08420
RAP-DB ID Os07g0182000
Function bZIP transcription factor domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 3.607

3) NUCPRED Prediction
localization Non Nuclear
score 0.73

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 1
Number Of Software Predicting Nucleus 3
Seed Specific Yes
Transcription factor category bZIP

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) RISBZ1|OsbZIP58|OsSMF1
Function assigned as per literature RISBZ1 is a transcriptional activator of rice seed storage protein genes
Subcellular localization as per literature Nuclear
Cells used for localization experiment rice protoplast
NUCLEAR or Not Nuclear NUCLEAR
PMID 19473328
Reference of localization https://onlinelibrary.wiley.com/doi/full/10.1111/j.1365-313X.2009.03925.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 3
Basic residues % 0.089
NLS score 1.32
Protein Sequence >LOC_Os07g08420.1 protein
MEHVFAVDEIPDPLWAPPPPVQPAAAAGVDDVGAVSGGGLLERCPSGWNLERFLEELDGVPAPAASPDGAAIYPSPMPAAAAEAAARWSRGYGDREAVGV
MPMPAAALPAAPASAAMDPVEYNAMLKRKLDEDLATVAMWRASGAIHSESPLGNKTSLSIVGSILSSQKCIEGNGILVQTKLSPGPNGGSGPYVNQNTDA
HAKQATSGSSREPSPSEDDDMEGDAEAMGNMILDEEDKVKKRKESNRESARRSRSRKAARLKDLEEQVSLLRVENSSLLRRLADANQKYSAAAIDNRVLM
ADIEALRAKVRMAEESVKMVTGARQLHQAIPDMQSPLNVNSDASVPIQNNNPMNYFSNANNAGVNSFMHQVSPAFQIVDSVEKIDPTDPVQLQQQQMASL
QHLQNRACGGGASSNEYTAWGSSLMDANELVNMELQ

GO Analysis
1
GO Category Molecular Function
GO Term protein binding
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No