| RGAP LOCUS ID |
LOC_Os07g06940 |
| RAP-DB ID |
Os07g0163500 |
| Function |
valyl-tRNA synthetase, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
cyto |
| score |
8.5 |
2) CELLO
Prediction
|
| localization |
Cytoplasmic |
| score |
1.745 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.26 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
94 |
| confidence value |
0.52 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
WP1|OsValRS2 |
| Function assigned as per literature |
plays an essential role in chloroplast development and regulating chloroplast ribosome biogenesis |
| Subcellular localization as per literature |
Chloroplast and Mitochondria |
| Cells used for localization experiment |
rice protoplast |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
26839129 |
| Reference of localization |
http://www.plantphysiol.org/content/170/4/2110 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.112 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os07g06940.1 protein
MVMMGIEFTGTVPFSYVYLHGLIRDSEGRKMSKTLGNVIDPLDTIKEYGTDALRFTLSMGTAGQDLNLSTERLTSNKAFTNKLWNAGKFLLQNLPDRSDA
TAWDVLLANKFDTEASLQKLPLPESWVVTGLHELIDRVSTSYDKFFFGDAAREIYDFFWGDFADWYIEASKTRLYHSGDDSASSMAQSVLLYVFENILKL
LHPFMPFVTEELWQALPYRKQAIIVAHWPATDLPKNSLSIKRFQNLQSLIRGIRNVRAEYSVEPAKRISSSVVAAADVLDYISKEKQVLALLSKLDMQSI
HFSELPPGDANQSVHIVADEGLEAYLPLADMVDVSEEVKRLSKRLSKMQSEYDSLLARLNSGSFVEKAPEEIVRGVREKASEAEEKISLTKNRLAFLQST
VSS |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 2 |
| GO Category |
Molecular Function |
| GO Term |
catalytic activity |
|
| 3 |
| GO Category |
Molecular Function |
| GO Term |
nucleotide binding |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
translation |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
reproduction |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
post-embryonic development |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
embryo development |
|
| 9 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| Presence of Splice variants |
No |
