LOC_Os07g06620

Expression Profile

RGAP LOCUS ID LOC_Os07g06620
RAP-DB ID Os07g0160100
Function YABBY domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 11

2) CELLO Prediction
localization Nuclear
score 3.572

3) NUCPRED Prediction
localization Non Nuclear
score 0.71

4) Y-Loc Prediction
localization Nuclear
score 34.99
confidence value 0.05
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category C2C2-YABBY

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsYABBY1|OsYAB1
Function assigned as per literature OsYAB1 plays role in meristem development and maintenance of stamens and carpels
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cell
NUCLEAR or Not Nuclear NUCLEAR
PMID 15604733
Reference of localization https://link.springer.com/content/pdf/10.1007/s11103-004-2648-y.pdf
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 7
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.151
NLS score 2.26
Protein Sequence >LOC_Os07g06620.2 protein
MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDHQVQNRGFQGNNFGSYDIASRNQRTSTAMYPMPTSQQQV
SPIRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNRRRRRRRRRQQLIAAARPAGRPPIAGVHAGARRRPVENARAGGTTTIYYYRVCP
SLFAA

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cellular_component
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Biological Process
GO Term cell differentiation
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES