LOC_Os07g05620

Expression Profile

RGAP LOCUS ID LOC_Os07g05620
RAP-DB ID Os07g0150700
Function CAMK_KIN1/SNF1/Nim1_like.28 - CAMK includes calcium/calmodulin depedent protein kinases, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 3

2) CELLO Prediction
localization Nuclear
score 1.845

3) NUCPRED Prediction
localization Non Nuclear
score 0.35

4) Y-Loc Prediction
localization Cytoplasm
score 56
confidence value 0.28
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCIPK23
Function assigned as per literature OsCIPK23 functions in pollination and drought stress responses in rice
Subcellular localization as per literature Nucleus and cytosol
Cells used for localization experiment Onion epidermal cells and root cells of transgenic rice plants
NUCLEAR or Not Nuclear NUCLEAR
PMID 18804072
Reference of localization https://www.sciencedirect.com/science/article/pii/S1673852708600739
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.144
NLS score -0.47
Protein Sequence >LOC_Os07g05620.1 protein
MSVSGGRTRVGRYELGRTLGEGTFAKVKFARNADSGENVAIKILDKDKVLKHKMIAQIKREISTMKLIRHPNVIRMHEVMASKTKIYIVMELVTGGELFD
KIASRGRLKEDDARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDASGTLKVSDFGLSALSQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKADLWSC
GVILFVLMAGYLPFEDSNLMSLYKKIFKADFSCPSWFSTSAKKLIKKILDPNPSTRITIAELINNEWFKKGYQPPRFETADVNLDDINSIFNESGDQTQL
VVERREERPSVMNAFELISTSQGLNLGTLFEKQSQGSVKRETRFASRLPANEILSKIEAAAGPMGFNVQKRNYKLKLQGENPGRKGQLAIATEVFEVTPS
LYMVELRKSNGDTLEFHKFYHNISNGLKDVMWKPESSIIAGDEIQHRRSP

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Cellular comBiological Processonent
GO Term nucleus
4
GO Category Biological Process
GO Term response to stress
5
GO Category Biological Process
GO Term response to abiotic stimulus
6
GO Category Molecular Function
GO Term kinase activity
7
GO Category Biological Process
GO Term protein modification process
8
GO Category Cellular comBiological Processonent
GO Term cytoplasm
9
GO Category Biological Process
GO Term transport
10
GO Category Molecular Function
GO Term protein binding
11
GO Category Cellular comBiological Processonent
GO Term cytosol
12
GO Category Biological Process
GO Term response to extracellular stimulus
13
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants YES