LOC_Os07g05010

Expression Profile

RGAP LOCUS ID LOC_Os07g05010
RAP-DB ID Os07g0143200
Function helix-loop-helix DNA-binding domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 12.5

2) CELLO Prediction
localization Nuclear
score 3.945

3) NUCPRED Prediction
localization Non Nuclear
score 0.77

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 1
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category bHLH

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsPIL14|OsPIF14
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 2
Number of Bipartite 2
Basic residues % 0.089
NLS score 1.59
Protein Sequence >LOC_Os07g05010.2 protein
MDAGATARSSSSSAMMMNQKKPLLSDGELVELLWQDGGVVAHAQTRHRSSDVLARSGVTGEEETASAWFADGGGGGGGDDDALGLGMGRDIYSQLWHSFA
NVDGHAAGALALATPTPTPRAAARSDDVSSRLDEADLSICGSNAVVAPALPADDDDDIDAAAPREEEEEEEEGPGAARAAGASSSGGSGSGSGSYPLFKR
GREELVDSLSEVADETRPSKRPAAKRRTRAAEVHNLSERRRRDRINEKLRALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGIVPMMFPGTH
QLMPPMGMGLNTACMPGAQAQGLNQMQRTTYYMNNSLPNQMPQIPSPAMNAPSVPDDMQNDNRIRGPRNPFLHCNDTLTATAQVPGLFTYGSQIAEQNEI
QELLSGAVIPSSSDGTIK

GO Analysis
1
GO Category Biological Process
GO Term signal transduction
2
GO Category Biological Process
GO Term response to abiotic stimulus
3
GO Category Molecular Function
GO Term DNA binding
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Biological Process
GO Term cellular process
7
GO Category Molecular Function
GO Term protein binding
8
GO Category Biological Process
GO Term post-embryonic development
9
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
10
GO Category Biological Process
GO Term response to endogenous stimulus
11
GO Category Cellular comBiological Processonent
GO Term nucleus
12
GO Category Biological Process
GO Term tropism
13
GO Category Biological Process
GO Term lipid metabolic process
Presence of Splice variants YES