LOC_Os07g04550

Expression Profile

RGAP LOCUS ID LOC_Os07g04550
RAP-DB ID Os07g0138100
Function pleckstrin homology domain-containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 10

2) CELLO Prediction
localization Nuclear
score 1.834

3) NUCPRED Prediction
localization Non Nuclear
score 0.51

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.33
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSWAP70B
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.124
NLS score -0.47
Protein Sequence >LOC_Os07g04550.1 protein
MASSGSSTVVGEMESSLERVRRQLSSTSSRHLLQGPLLKRSDTLRKWNERWVILDPATGKMEYKIRRSDAAVRGIIVFDSTSTVTLSPMNFHGLPKYDGC
CFYIGTPQKKEYFLCAETPSAARAWVSTLHASQLVLQAHKEAVNSLGGNGPTKLGKVATVVAVANATAIEASKEVEAAMKVSLRAALGSTTNKLSKGQLD
DLTIMMETLRVKDDELHQLLQDIRARDATIREITDKLQETAEAAETAASAAHSIDEQRRFLSSELERLKQDQEKQIEFSLLRLRESEEKAKLLSEEREHL
LKERDSALQEAQMWRSELGKARGNAVILEAAVVRAEEKARVSAADADMRINDAASRLDSATKEKEELVALVDALQLQIRSQDTSTKQVCEERSELCSTSS
KHVDMEDDNVDKACLSDTDPIPITENIVDLDDDGVDIPTIGVTEWNNPHSSEVSDVREVTTEPEDNSLDIPVDSQPVSENAFHG

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cell wall
2
GO Category Biological Process
GO Term signal transduction
3
GO Category Molecular Function
GO Term lipid binding
Presence of Splice variants No