LOC_Os07g01770

Expression Profile

RGAP LOCUS ID LOC_Os07g01770
RAP-DB ID Os07g0108400
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 6

2) CELLO Prediction
localization Nuclear
score 1.796

3) NUCPRED Prediction
localization Non Nuclear
score 0.18

4) Y-Loc Prediction
localization Secreted pathw
score
confidence value 0.13
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSMCP1
Function assigned as per literature OsSMCP1is involved in abiotic and biotic stresses tolerance
Subcellular localization as per literature Chloroplasts
Cells used for localization experiment Rice epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 19653105
Reference of localization https://link.springer.com/article/10.1007%2Fs11103-009-9530-x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.107
NLS score -0.47
Protein Sequence >LOC_Os07g01770.1 protein
MSDLPGFLSVRVLRGVNLVSRDAGGSDPYVVLHLDNQKLKTGVVKKTTNPVWNEELTLAVRNPETPIQLEVFDKDTFSKDDQMGDAEFDIEALMQIVRMD
LQDIRSGTVVRTVRPGRQCCLADESHIVWENGQIVQDMLLKLRNVETGVVHLQLKWVNIPENSLPWGVEPRTSGATEALVTTRLQALSQESPNFPKPIKW
SRSREQHATPPPATADDPGLAVYWGRHKEEGSLREACDTGRYNTVIITFYNVFGYGRYSLDISGHPLAAVGADIKHCQSRGITVLLSIGGQGGGYSLPTK
ASAADVADNLIWNAYLGGHRAGVHRPFGDDAAVDGIDFFIDQGGADHYDDLARLLNGYNKYYDDLALQVRSDSPSLPQSAAASAASRPLEEQHLFHSSNP
STSKSIILDLRARMRSSSTSSLQKVKTSVKKKSVNPIWHEELTLSIMNPIAPIKLGVFDKDTFSRDDPMGDAEIDLEPFMEVLNMDPENIRNGSIIKTIR
PSNQNCLADESHLFWRNGKFVQDIILRLRNVESGELQVQLQWVKIPGRH

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No