| RGAP LOCUS ID |
LOC_Os07g01030 |
| RAP-DB ID |
Os07g0100300 |
| Function |
glycosyl transferase, group 1 domain containing protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
12 |
2) CELLO
Prediction
|
| localization |
PlasmaMembrane |
| score |
2.369 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.47 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
9 |
| confidence value |
0.36 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
SQD2.1 |
| Function assigned as per literature |
SQD2.1 has a novel function in the glycosylation of flavonoids that is required for osmotic stress tolerance in rice. |
| Subcellular localization as per literature |
chloroplasts and cytoplasm |
| Cells used for localization experiment |
tobacco leaves (Nicotiana benthamiana) |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
30942482 |
| Reference of localization |
https://onlinelibrary.wiley.com/doi/abs/10.1111/pce.13554 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
2 |
| Number of PAT7 |
0 |
| Number of Bipartite |
1 |
| Basic residues % |
0.127 |
| NLS score |
0.58 |
| Protein Sequence |
>LOC_Os07g01030.1 protein
MAAWNTSILLPPPPPLLSRAAVATPALNPYPLRLHRRHPQKPLCLPSESYPADTDADASSASLDSRPRRIALFVEPSPFAYVSGYKNRFLNFIKYLREMG
DEVIVITTHEGVPQEFYGAKLIGSWSFPCPWYQKVPLSLALSPRIIGEVARFKPDIIHASSPGIMVFGALIIAKLLCVPLVMSYHTHVPIYIPRYTFSWL
VKPMWLIIKFLHRAADLTLVPSVAIGKDLQAARVTAANKIRLWNKGVDSESFHPRFRNDEMRARLTNGEPEKPLILYVGRLGVEKSLDFLKRVMDRLPGS
RIAFVGDGPFRAELQLMFTGMPAVFTGTLQGEELSQAYASGDVFVMPSESETLGFVVLEAMSSGVPVVAARAGGIPDIIPEDQEGKTSFLYTPGDVDDCV
SKIERLLTCEELRETMRKAARKEMEKFDWRAATRKIRNEQYSAAIWFWRKKRAQLLRPIQWVSRRLFRPTPAPSTMNQS |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
response to extracellular stimulus |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
cell communication |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
lipid metabolic process |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
transferase activity |
|
| 9 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| Presence of Splice variants |
No |
