| RGAP LOCUS ID |
LOC_Os06g51220 |
| RAP-DB ID |
Os06g0728000 |
| Function |
HMG1/2, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
14 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
3.704 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.15 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
100 |
| confidence value |
0.98 |
| Number Of Software Predicting Nucleus |
3 |
| Seed Specific |
No |
| Transcription factor category |
HMG |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
HMGB1|OsHMGB1 |
| Function assigned as per literature |
Rice HMGB1 protein recognizes DNA structures and bends DNA efficiently and OsCML3 probably provides a mechanism for manipulating the DNA-binding ability of OsHMGB1 in the nucleus |
| Subcellular localization as per literature |
Nucleus when interacted with OsCML3 |
| Cells used for localization experiment |
Tobacco leaves |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
26423116 |
| Reference of localization |
https://academic.oup.com/abbs/article/47/11/880/1446 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
1 |
| Number of PAT7 |
2 |
| Number of Bipartite |
0 |
| Basic residues % |
0.229 |
| NLS score |
1.33 |
| Protein Sequence |
>LOC_Os06g51220.2 protein
MKGAKSKGAAKPDAKLAVKSKGAEKPAAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLTEADKAPYVAKANKLK
AEYNKAIAAYNKGESTAKKAPAKEEEEDDEEESDKSKSEVNDEDDDEGSEEDEDDDE |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
cellular component organization |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 3 |
| GO Category |
Molecular Function |
| GO Term |
DNA binding |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 5 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
intracellular |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
structural molecule activity |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
chromatin binding |
|
| 10 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| Presence of Splice variants |
YES |
