LOC_Os06g50120

Expression Profile

RGAP LOCUS ID LOC_Os06g50120
RAP-DB ID Os06g0715100
Function novel plant SNARE 11, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 9

2) CELLO Prediction
localization Nuclear
score 2.442

3) NUCPRED Prediction
localization Non Nuclear
score 0.42

4) Y-Loc Prediction
localization Nuclear
score 91.73
confidence value 0.61
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsNPSN11
Function assigned as per literature OsNPSN11 may be involved in the signal transduction in responses to abiotic stresses
Subcellular localization as per literature Plasma membranes
Cells used for localization experiment Plasmolyzed onion epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 18197419
Reference of localization https://link.springer.com/article/10.1007%2Fs00438-007-0313-2
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.138
NLS score -0.47
Protein Sequence >LOC_Os06g50120.1 protein
MDLESVNPELAEIDGQIGDILRALQNGFQKLDKIKDANRRSRQLEELTDKMRDCKRLIKDFERVVKDMAGSTDPETARMLHDRKQSMIKELNSYVALKKQ
YASENKRVDLFDGPSVEDGFGEENVLLASNMTNQQLMDQGNQLMDETDQAIARSKQTVQETINVGTETAAALKSQTEQMSRIVNELDSIHFSIKKASQMV
KEIGRQVATDRCIMALLFLIVAGVIAIIVVKIVNPQNKTIRDIPGLAPPVSRRLLSIVEDI

GO Analysis
1
GO Category Molecular Function
GO Term protein binding
2
GO Category Cellular comBiological Processonent
GO Term cytoplasm
3
GO Category Molecular Function
GO Term transporter activity
4
GO Category Biological Process
GO Term cellular process
5
GO Category Biological Process
GO Term transport
6
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants YES