LOC_Os06g49840

Expression Profile

RGAP LOCUS ID

LOC_Os06g49840

RAP-DB ID

Os06g0712700

Function

OsMADS16 - MADS-box family gene with MIKCc type-box, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction

localization

Nuclear

score

2) CELLO Prediction

localization

Nuclear

score

2.264

3) NUCPRED Prediction

localization

Non Nuclear

score

0.44

4) Y-Loc Prediction

localization

Nuclear

score

99.97

confidence value

0.88

Number Of Software Predicting Nucleus

Seed Specific

Transcription factor category

MIKC_MADS

Experimental evidence for subcellular localization

Published gene name (updated 1 January 2020)

OsMADS16|SPW1

Function assigned as per literature

OsMADS16 plays an important role in floral development, especially lodicule development

Subcellular localization as per literature

Nucleus when interacted with OsMADS4

Cells used for localization experiment

Onion epidermal cells

NUCLEAR or Not Nuclear

NUCLEAR

PMID

20888318

Reference of localization

https://www.sciencedirect.com/science/article/pii/S0006291X10018188

Is Subcellular localization evidence by author available ?

Sequence Analysis

Number of PAT4

Number of PAT7

Number of Bipartite

Basic residues %

0.143

NLS score

0.7

Protein Sequence

>LOC_Os06g49840.1 protein
MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQAIGTSLWIEQYENMQRTLSHLKDINRN
LRTEIRQRMGEDLDGLEFDELRGLEQNVDAALKEVRHRKYHVITTQTETYKKKVKHSYEAYETLQQELGLREEPAFGFVDNTGGGWDGGAGAGAAADMFA
FRVVPSQPNLHGMAYGGNHDLRLG

GO Analysis

GO Category	Molecular Function
GO Term	DNA binding

GO Category	Cellular comBiological Processonent
GO Term	nucleus

GO Category	Biological Process
GO Term	biosynthetic process

GO Category	Biological Process
GO Term	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process

GO Category	Biological Process
GO Term	flower development

GO Category	Molecular Function
GO Term	sequence-specific DNA binding transcription factor activity

Presence of Splice variants

YES