LOC_Os06g49450

Expression Profile

RGAP LOCUS ID LOC_Os06g49450
RAP-DB ID Os06g0708200
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 11

2) CELLO Prediction
localization Nuclear
score 3.712

3) NUCPRED Prediction
localization Non Nuclear
score 0.55

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.55
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsMTOPVIB
Function assigned as per literature OsMTOPVIB promotes meiotic DNA double-strand break formation in rice
Subcellular localization as per literature Meiotic chromosomes
Cells used for localization experiment Meiocytes
NUCLEAR or Not Nuclear NUCLEAR
PMID 27456761
Reference of localization https://www.cell.com/action/showPdf?pii=S1674-2052%2816%2930137-X
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.103
NLS score -0.47
Protein Sequence >LOC_Os06g49450.1 protein
MASSPPPSTASPTSSSPYRKLLHSLIYWAVQRCRMSESPCRLTVSVKRSPEPAGSSPLRISVSDTGVGSKLEEFLELDALARETPVEKWDGTLLITTTGI
DDKAIYRYQFNLQEDTSSSTRFTKLVTTGTEVCLCLPTEADVDDLILWLVGFVRKIFVLRASNLACELFVAQTDSAGSGDVCLSQDSDDVHISITTSSID
RLVSGLKDYALSHANTSDRCEACYMNRDRLKIGTGTAKYVDKRKAKGQLVEVVIMLAPTSSDLSCWMTNCSSTQVLHFVEFIPCPISQSSLSALMSIDWQ
SYATAVDEWKSSQPERHLLRKALKSALFGLKADHAEDFLSCHGQKNNFHIESFHTKRTVLRFEKRAMSIQKLIQPKVREYVPDLAESIAGLILSSNDQEF
QDECIALLGLGSDQDLTEGAVRSCIGEKMNRIVEMNDTKENVEHNAPYLFECERFDEDYSLLDEDDPDEDMIFDF

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cell
2
GO Category Molecular Function
GO Term molecular_function
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES