LOC_Os06g49250
| RGAP LOCUS ID | LOC_Os06g49250 | ||||
| RAP-DB ID | Os06g0706400 | ||||
| Function | peptide transporter PTR2, putative, expressed | ||||
Sub-cellular Localization Predictions |
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1) WoLF-PSORT Prediction |
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| localization | plas | ||||
| score | 8 | ||||
2) CELLO Prediction |
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| localization | PlasmaMembrane | ||||
| score | 4.702 | ||||
3) NUCPRED Prediction |
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| localization | Non Nuclear | ||||
| score | 0.01 | ||||
4) Y-Loc Prediction |
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| localization | Cytoplasm | ||||
| score | 76 | ||||
| confidence value | 0.71 | ||||
| Number Of Software Predicting Nucleus | 0 | ||||
| Seed Specific | No | ||||
| Transcription factor category | |||||
Experimental evidence for subcellular localization |
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| Published gene name (updated 1 January 2020) | OsPTR9|OsNPF8.20 | ||||
| Function assigned as per literature | OsPTR9 improves nitrogen utilization efficiency and grain yield in rice breeding. | ||||
| Subcellular localization as per literature | Plasma membrane | ||||
| Cells used for localization experiment | Onion epiermal cells | ||||
| NUCLEAR or Not Nuclear | NOT NUCLEAR | ||||
| PMID | 23231455 | ||||
| Reference of localization | https://onlinelibrary.wiley.com/doi/full/10.1111/pbi.12031 | ||||
| Is Subcellular localization evidence by author available ? | No | ||||
Sequence Analysis |
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| Number of PAT4 | 0 | ||||
| Number of PAT7 | 0 | ||||
| Number of Bipartite | 0 | ||||
| Basic residues % | 0.064 | ||||
| NLS score | -0.47 | ||||
| Protein Sequence | >LOC_Os06g49250.1 protein MASTDTEQQEHAVALLQPEVEEAYTTDGSLGVDGNPALKHRTGGWMACRPILGTEFCYCLAYYGITFNLVTYLTAELHQSNVAAANNVSTWQATCFLTPL AGAVAADSYWGRYRTMVVSCCIGVAGMLMAALSALLPLLIKDTSSMASAQVIILFLGLYMIAFGVGGLRPCLMSFGADQFDDGDTSERISKGSYFNWYIF TMNCASVISTTAMVWVQDHYGWALGLGIPAMVLAVGLSCLVAASRAYRFQTTRGSPLTRVCQVVVAAVRKFNVAPPADMALLYDLSEDASSMKGVQRIEH TADLRFFDKAAVVTASDEEAEGAAPRNPWRLCVVTQVEELKILVRMLPLWACVAFYYTATAQANSTFVEQGMAMDTRVGSFHVPPASLATFQIITTIVLI PLYDRAFVPAARRLTGREKGISDLLRIGGGLAMAALAMAAAALVETRRARAAHAGMEPTSILWQAPQYVLVGVGELLATVGQLDFFYSQAPPAMKTVCTA LGFISVAAGEYLSSLVVTAVSWATATGGRPGWIPDDLNEGHLIASSG |
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GO Analysis |
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| Presence of Splice variants | YES | ||||