LOC_Os06g49040

Expression Profile

RGAP LOCUS ID LOC_Os06g49040
RAP-DB ID Os06g0703900
Function Myb-like DNA-binding domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 4.495

3) NUCPRED Prediction
localization Non Nuclear
score 0.69

4) Y-Loc Prediction
localization Nuclear
score 99.91
confidence value 0.89
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category G2-like

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsPHR4
Function assigned as per literature OsPHR4 mediates the regulation of Pi-starvation signaling and Pi-homeostasis in a PHR1 subfamily dependent manner in rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 27878661
Reference of localization https://link.springer.com/article/10.1007%2Fs11103-016-0564-6
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 1
Basic residues % 0.111
NLS score 0.02
Protein Sequence >LOC_Os06g49040.1 protein
MSSQSVVAVKQITAPDKIVETCPSTKHSAHKLFDVKPDFQGLIDDNLSSSSQSSSIKIELIRSSSLPNILPFQKRSSEPEPESPLSHVSHPNVSEPVYSN
SSTFCTSLFSSSSMETEPCRQLGTLPFLPHPPKCEQQVSAGHSSSSSLLVPGGDGDIGNAHDEPEQSDDLKDFLNLSGGDASDGSFHGENNAMAFAEQME
FQFLSEQLGIAITDNEESPRLDDIYGTPPQLSSLPVSSCSNQSVQKAGSPVKVQLSSPRSSSGSATTNKARLRWTLELHERFVEAVNKLDGPEKATPKGV
LKLMKVEGLTIYHVKSHLQKYRLAKYLPETKEDKKASSEDKKSQSGSSGNDSVKKKNLQVAEALRMQMEVQKQLHEQLEVQRQLQLRIEEHARYLQRILE
EQHKVSISSNSLSLKPPAESQPESPKPTSEKKEAESEAGAATSAQPSSEDKSPDAECKSSPPVGSKRARVHVGDEHQCS

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No