LOC_Os06g48950

Expression Profile

RGAP LOCUS ID LOC_Os06g48950
RAP-DB ID Os06g0702600
Function auxin response factor 19, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 7

2) CELLO Prediction
localization Nuclear
score 3.869

3) NUCPRED Prediction
localization Non Nuclear
score 0.68

4) Y-Loc Prediction
localization Nuclear
score 96.69
confidence value 0.44
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category ARF

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsARF19
Function assigned as per literature OsARF19 plays important roles in floral organ development, internode elongation, and leaf morphogenesis
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice protoplast
NUCLEAR or Not Nuclear NUCLEAR
PMID
Reference of localization https://link.springer.com/article/10.1007/s11105-015-0962-y
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.077
NLS score 0.12
Protein Sequence >LOC_Os06g48950.1 protein
MMKQAQQQPPPPPASSAATTTTAMAAAAAAAVVGSGCEGEKTKAPAINSELWHACAGPLVSLPPAGSLVVYFPQGHSEQADPETDEVYAQMTLQPVTSYG
KEALQLSELALKQARPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLF
AGDSVIFVRDEKQQLLLGIRRANRQPTNISSSVLSSDSMHIGILAAAAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYGNQISLGMRFRMMFETEE
LGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESAAGERRNRVSIWEIEPVAAPFFICPPPFFGAKRPRQLDDESSEMENLLKRAMPWLGEEICIKDP
QTQNTIMPGLSLVQWMNMNMQQSSSFANTAMQSEYLRSLSNPNMQNLGAADLSRQLCLQNQLLQQNNIQFNTPKLSQQMQPVNELAKAGIPLNQLGVSTK
PQEQIHDASNLQRQQPSMNHMLPLSQAQTNLGQAQVLVQNQMQQQHASSTQGQQPATSQPLLLPQQQQQQQQQQQQQQQQQQQQKLLQQQQQQLLLQQQQ
QLSKMPAQLSSLANQQFQLTDQQLQLQLLQKLQQQQQSLLSQPAVTLAQLPLIQEQQKLLLDMQQQLSNSQTLSQQQMMPQQSTKVPSQNTPLPLPVQQE
PQQKLLQKQAMLADTSEAAVPPTTSVNVISTTGSPLMTTGATHSVLTEEIPSCSTSPSTANGNHLLQPILGRNKHCSMINTEKVPQSAAPMSVPSSLEAV
TATPRMMKDSPKLNHNVKQSVVASKLANAGTGSQNYVNNPPPTDYLETASSATSVWLSQNDGLLHQNFPMSNFNQPQMFKDAPPDAEIHAANTSNNALFG
INGDGPLGFPIGLGTDDFLSNGIDAAKYENHISTEIDNSYRIPKDAQQEISSSMVSQSFGASDMAFNSIDSTINDGGFLNRSSWPPAAPLKRMRTFTKVY
KRGAVGRSIDMSQFSGYDELKHALARMFSIEGQLEERQRIGWKLVYKDHEDDILLLGDDPWEEFVGCVKCIRILSPQEVQQMSLEGCDLGNNIPPNQACS
SSDGGNAWRARCDQNSEAILKISMMKSKVEDVRYWNTA

GO Analysis
1
GO Category Biological Process
GO Term response to endogenous stimulus
2
GO Category Molecular Function
GO Term DNA binding
3
GO Category Cellular comBiological Processonent
GO Term nucleus
4
GO Category Biological Process
GO Term post-embryonic development
5
GO Category Biological Process
GO Term growth
6
GO Category Biological Process
GO Term biosynthetic process
7
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
8
GO Category Biological Process
GO Term signal transduction
9
GO Category Biological Process
GO Term response to abiotic stimulus
10
GO Category Molecular Function
GO Term protein binding
11
GO Category Biological Process
GO Term tropism
12
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
13
GO Category Biological Process
GO Term multicellular organismal development
Presence of Splice variants No