LOC_Os06g48810

Expression Profile

RGAP LOCUS ID LOC_Os06g48810
RAP-DB ID Os06g0701700
Function OsHKT2;1 - Na+ transporter, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 11

2) CELLO Prediction
localization PlasmaMembrane
score 4.929

3) NUCPRED Prediction
localization Non Nuclear
score 0.18

4) Y-Loc Prediction
localization Chloroplast
score 8
confidence value 0.37
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHKT2;1|OsHKT1
Function assigned as per literature OsHKT2;1 plays an exclusive role in nutritional Na+ uptake into K+ starved rice roots
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Tobacco mesophyll cell protoplast and Arabidopsis epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 17541409
Reference of localization http://emboj.embopress.org/content/26/12/3003.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.089
NLS score -0.04
Protein Sequence >LOC_Os06g48810.1 protein
MTSIYHDFIHNKLQSFGRIGRYFVNFVVLAHRFIALHIHPFWIQLSYFLLISILGSVLLMFLKPSNPEFRPGYIDMLFLSTSALTLSSLITIEMEVLSSS
QIVVITLLMLLGGEVFVSFLGLMLRLNHKHNPEFSGDKVSSVPIELDTINSASTVISCEELQLEAAIPEVPSSTIKDLKRSKRLRWFLGFVVFSYFVVIH
VAGFLLVLWYISRVSSAKAPLKKKGINIALFSFSVTVSSFANVGLVPTNENMAIFSKNPGLLLLFIGQILAGNTLYPLFLRLLIWFLGKVTKLRELKLMI
KNPEELQYDYLLPKLPTAFLASTVIGLMASLVTLFGAVDWNSSVFDGLSSYQKIINALFMAVNARHSGENSIDCSLIAPAVLVLFIILMYLPPSTTFALS
NGDEKTANKKAKRKLGLVVQNLAFSQLACISVFVIVAFITERSRLRNDPLNFSALNMIFEIISAYGNVGLSTGYSCSRLQKLHPGSICQDKPYSLSGWWS
DEGKLLLVFVMLYGRLKAFTKGTGEYWRLW

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Biological Process
GO Term cellular process
3
GO Category Biological Process
GO Term response to stress
4
GO Category Biological Process
GO Term response to abiotic stimulus
5
GO Category Molecular Function
GO Term transporter activity
6
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants No