| RGAP LOCUS ID |
LOC_Os06g48720 |
| RAP-DB ID |
Os06g0700700 |
| Function |
cadmium/zinc-transporting ATPase 4, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
5 |
2) CELLO
Prediction
|
| localization |
PlasmaMembrane |
| score |
2.824 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.01 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
85 |
| confidence value |
0.59 |
| Number Of Software Predicting Nucleus |
1 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsHMA2|OsHMA2v |
| Function assigned as per literature |
OsHMA2 transporter is involved in root-to-shoot translocation of Zn and Cd in rice |
| Subcellular localization as per literature |
Plasma membrane |
| Cells used for localization experiment |
Onion epidermal cells |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
22548273 |
| Reference of localization |
https://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1365-3040.2012.02527.x |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.096 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os06g48720.1 protein
MAAEGGRCQKSYFDVLGICCPSEVPLVEKLLQPLEGVQKVTVIVPSRTVIVVHDVDAISQSQIVKALNQARLEASVRAYGNGSEKITNKWPSPYVLLCGL
LLVVSLFEHFWHPLKWFALVAAAAGLPPIVLRSIAAIRRLTLDVNILMLIAGKNSL |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 4 |
| GO Category |
Molecular Function |
| GO Term |
hydrolase activity |
|
| 5 |
| GO Category |
Molecular Function |
| GO Term |
transporter activity |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
transport |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
catabolic process |
|
| Presence of Splice variants |
No |
