LOC_Os06g48060

Expression Profile

RGAP LOCUS ID LOC_Os06g48060
RAP-DB ID Os06g0695800
Function ABC transporter, ATP-binding protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 12

2) CELLO Prediction
localization Mitochondrial
score 2.476

3) NUCPRED Prediction
localization Non Nuclear
score 0.17

4) Y-Loc Prediction
localization Mitochondrion
score
confidence value 0.76
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) STAR1
Function assigned as per literature STAR1 is required for detoxification of Al in rice
Subcellular localization as per literature membrane of some vesicles
Cells used for localization experiment Rice Roots
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 19244140
Reference of localization http://www.plantcell.org/content/21/2/655.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.124
NLS score -0.47
Protein Sequence >LOC_Os06g48060.1 protein
MRRLGLSLHHDTSPSFAALACNQRPPPNGTVHACSKSRPPQLEPGKVGKKPIKKTMRIARIPTSIPPHLRLPLDLSAVSPMGSASEHDVREHLLDVDGVG
EEGAAAAAGPKIRVRGLTRRSEARGEEILRGVDLDVPRGVVVGVIGPSGSGKSTLLRALNRLWEPAPGAVLLDGVDICGIDVLALRRKVGMLFQLPAMFD
GTVADNVRYGPQLQGKKLTDAEVQSLLSLADLDPALCSKPASELSVGQAQRVALARTLANDPEVLLLDEPTSALDPISTQNIEEAIVRLKKTRGLTTVMV
SHSVKQIQRIADLVCLLVAGEVVEVLPPSELSEAKHPMARRFLELS

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Cellular comBiological Processonent
GO Term membrane
3
GO Category Cellular comBiological Processonent
GO Term vacuole
4
GO Category Cellular comBiological Processonent
GO Term plasma membrane
5
GO Category Molecular Function
GO Term transporter activity
Presence of Splice variants No