LOC_Os06g48040

Expression Profile

RGAP LOCUS ID LOC_Os06g48040
RAP-DB ID Os06g0695600
Function zinc finger, C3HC4 type domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 12

2) CELLO Prediction
localization Nuclear
score 4.105

3) NUCPRED Prediction
localization Non Nuclear
score 0.72

4) Y-Loc Prediction
localization Nuclear
score 99.99
confidence value 0.98
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsMAR1
Function assigned as per literature OsMAR1 acts as a negative regulator for salt-stress response
Subcellular localization as per literature Cytosol
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 29260397
Reference of localization https://link.springer.com/article/10.1007%2Fs00425-017-2834-1
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.14
NLS score -0.47
Protein Sequence >LOC_Os06g48040.1 protein
MEEDSGRSISTTGFLRRGSSVSLKDQGNEERPNKTKLNPMNARWADSKEKPRYLREPFRSSGTKAACPSSSKAPVRKYFEEKQGRTFLGEADNAESSSRR
TEANRLQCSKKAVVEEDVHPYGQQDEPEDLLSTSTTEDQPAELDPELLDSSVSSGVSAHAIGSVVRNAALRSKSRQQKGKEELCQIRPQTASAFVNRSTI
PRNSTNGVKSSNAAGPGVQRRTLKNLGCTSISDVLPSGCSSANSIHNKRAEVMRNRAFDGESSSRPRGLNGHSSLGHSPAMYSGITGPRVRTAEQSASQQ
TRTSSRSIQESADSSRIRRPSTQHARVRVPNEREDSVFALRETLARDRQPEWAHFSLGEAAPRRSMRPFSMELPHEIYSSSRQGSSNQTARSRSSYRPDE
SPPQMFHGLLVERENYRRINMEGIAEVLLALDRIEQDDELTYEQLLVLETNLFLSGLGLHDQHRDMRMDIDNMSYEELLALEERIGSVSTALSDEQLVKC
LKRNVYKLPNSDLEANRAVLDDAKCSICQEEYIEGEEVGRMQCEHQYHVSCIHEWLRQKNWCPICKTSAIPSEMDKGGT

GO Analysis
1
GO Category Molecular Function
GO Term binding
Presence of Splice variants No