LOC_Os06g47860

Expression Profile

RGAP LOCUS ID LOC_Os06g47860
RAP-DB ID Os06g0693700
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 12

2) CELLO Prediction
localization Nuclear
score 3.143

3) NUCPRED Prediction
localization Non Nuclear
score 0.62

4) Y-Loc Prediction
localization Nuclear
score 98.5
confidence value 0.87
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSIDP366
Function assigned as per literature OsSIDP366 may function as a regulator of the PBs/SGs and positively regulate salt and drought resistance in rice
Subcellular localization as per literature cytoplasm
Cells used for localization experiment root cells of transgenic rice plants
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 26172270
Reference of localization https://onlinelibrary.wiley.com/doi/abs/10.1111/jipb.12376
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.132
NLS score 0.15
Protein Sequence >LOC_Os06g47860.1 protein
MGSGNLMMKKVVRPSSFDFDIQLDKSWTEDVTCPICLDYPHNAVLLRCTSYEKGCRPFVCDTDQTRSNCLERFKGAYELPANMKVSTIAVAPLDSIHIVA
PNVNNRPSCPLCRGDVIGWIVIGEARLHLNQKKRCCEEDCCSFVGNFNELQKHTQQKHPDSRPSEIDPARQVDWENFQQSSDIVDVLSTIHAQVPNGIVL
GDYVIEYGDDETGEEYEVFRRVRRHWWSFMFFRGFSRSSRRRRRARARERRGSGRRNSNQAHLESFNLEVPTQSVDLREIRFDEIDDEYIVTGAIPSIAT
PGRMASFHYRSVETVYC

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES