LOC_Os06g47830

Expression Profile

RGAP LOCUS ID LOC_Os06g47830
RAP-DB ID Os06g0693300
Function RPA2C - Putative single-stranded DNA binding complex subunit 2, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction

localization chlo
score 13

2) CELLO Prediction

localization Extracellular
score 2.304

3) NUCPRED Prediction

localization Non Nuclear
score 0.18

4) Y-Loc Prediction

localization Chloroplast
score 9
confidence value 0.84
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization

Published gene name (updated 1 January 2020) RPA2c
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis

Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.067
NLS score -0.47
Protein Sequence >LOC_Os06g47830.1 protein
MAAAASYFSGTALMPSQRSGAPAPEYSAAGTGAAAAPSPSKPRDPRFSGCVPATVLHISRSFAAALAADGGGDPVFSIDGVETTNVRVLGRVVSVVSRDT
DVCFTLDDSTGKIPLVRWITDQSDTRDTSYIQEGVYVKVQVNLMGFQAKKQGLARSIRPINNFNEVVLHFIECMHVHLESVQSKMQRQLPPSVQTNEYTH
VPSSGGVRDYQVHFTPQVNQGLPPAVQTNTSTYVPLLGGVRDHQAHFAQVNQGQFSPAVQANTSTHLPFSGGVGEHQIHFTPKVNQGQFPPSVQTNTSAH
VPYSGGFREHQVHFTPPVNQGQFPPAVQTNLYNHAASSGGVREQVHLTQANQFSAYSSTGGLQHDPQRMVLEALQQPDILALEHGAHVDELVRRTGMPKA
NIMGVVKHLAAAGFVYWTIDDNHVKSMCNG

GO Analysis

1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Biological Process
GO Term cellular process
4
GO Category Biological Process
GO Term response to stress
5
GO Category Biological Process
GO Term DNA metabolic process
6
GO Category Molecular Function
GO Term protein binding
7
GO Category Biological Process
GO Term biosynthetic process
Presence of Splice variants No