LOC_Os06g47340

Expression Profile

RGAP LOCUS ID LOC_Os06g47340
RAP-DB ID Os06g0687900
Function glycosyltransferase family 43 protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 8

2) CELLO Prediction
localization PlasmaMembrane
score 1.205

3) NUCPRED Prediction
localization Non Nuclear
score 0.28

4) Y-Loc Prediction
localization Chloroplast
score 7
confidence value 0.24
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsIRX14
Function assigned as per literature OsGT43J is involved in xylan biosynthesis
Subcellular localization as per literature Golgi apparatus
Cells used for localization experiment Arabidopsis protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 24525904
Reference of localization https://www.tandfonline.com/doi/pdf/10.4161/psb.27809
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.105
NLS score -0.47
Protein Sequence >LOC_Os06g47340.1 protein
MMKSLLPQSQLRRSAAAASAARSSGGGAGSGGADGAGSDGGAGGRAPATSTFWFLLHALCCLVSLFLGFRFSRLLFFLLFSTTALYSSTSSSSSSAVLRA
TTTTTTTTTTTTTTTNTFTLSFQANPNPPPSNLSNHTALDAAGAAGHTQSHVVVGRHGIRIRPWPHPDPVEVMRAHRIMERVQEEQRRWYGVKEPRHVLV
VTPTYSRAFQALHLTGLLHSLRNVPYPLTWIVVEAGGTTNATASLLARSDLTIVHIPFPDRMPHDWADRHATENRMRLHALRVIRERKMDGVIVFADDSN
VHSLELFDEVQKVQWMGAVSVGILAHTGTADQPRLSEEDKQNMPLPVQGPACNSSGHLAGWHTFNSLPFAGKTATVVGEAAPVLPRGLEWAGFVLNSRIL
WKEAEGKPDWVKDLDAVGENGEEIENPLILLNDPSSVEPLGNCGKKILLWWLRVEARADSKFPQGWVIEPPLDIVVPAKRTPWPETTAELSAELVDSKQD
QEGRRLSRTDRSSRSRSTTKRKEN

GO Analysis
1
GO Category Molecular Function
GO Term transferase activity
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Cellular comBiological Processonent
GO Term Golgi apparatus
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term carbohydrate metabolic process
6
GO Category Biological Process
GO Term cellular process
Presence of Splice variants No