LOC_Os06g47270

Expression Profile

RGAP LOCUS ID LOC_Os06g47270
RAP-DB ID Os06g0687200
Function zinc finger, C3HC4 type domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 8

2) CELLO Prediction
localization Cytoplasmic
score 2.036

3) NUCPRED Prediction
localization Non Nuclear
score 0.22

4) Y-Loc Prediction
localization Nuclear
score 99.48
confidence value 0.72
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsDIRP1
Function assigned as per literature OsDIRP1 plays an opposite role in drought /salt and cold stress responses as a negative and positive factor, respectively, in rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 30568669
Reference of localization https://www.frontiersin.org/articles/10.3389/fpls.2018.01797/full
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.08
NLS score 0.7
Protein Sequence >LOC_Os06g47270.1 protein
MENACEAGLPLSVAVSVPPVMVDGETVPKEVEECEDEEEEEEYAGDAPPPWKVMGSDDEGETEAGEEEEIAEADGEEEAADVEEVEYEFYDSDGSEDEGD
GEEVDPAVASAAQFVPEGQFLGSAQFAAYGCAAGFMRVAAVEADPADGQEILVLYRYTLLKRAWSDPAGVELSMWAKVSKIHRLRFIVPASGDPASSLPF
AGLSLSPLIYHNDYVEELETLWSKLAAQVRVPPVATRVQVIVDVGILRAGDNTPERREYMRAELEAKKEMPWPGKLLGMELHVPEPVVAAAASCKRDSSE
EVFDDAPAPPAKRRKVFDAGEECPVCLDELEDGVVAWPGCSVAHVFHGQCLETTLKGSQMCPICRRDLGLKTLQE

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cell
2
GO Category Molecular Function
GO Term binding
Presence of Splice variants No