| RGAP LOCUS ID |
LOC_Os06g46950 |
| RAP-DB ID |
Os06g0683400 |
| Function |
EF hand family protein, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
mito |
| score |
9 |
2) CELLO
Prediction
|
| localization |
Cytoplasmic |
| score |
1.884 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.2 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
99.68 |
| confidence value |
0.85 |
| Number Of Software Predicting Nucleus |
1 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
CCD1 |
| Function assigned as per literature |
OsCCD1 positively regulates osmotic and salt tolerance in rice |
| Subcellular localization as per literature |
Nucleus and cytosol |
| Cells used for localization experiment |
Rice protoplasts |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
27095404 |
| Reference of localization |
https://www.sciencedirect.com/science/article/pii/S0168945216300401 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.072 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os06g46950.1 protein
MAAEQRQQQQMMQEGFEDYLPVMAERLGEEGLMQELASGFRLLMDPASGLITFDSLRRNAPLLGLGGMSDDDLRGMLAEGDFDGDGALSEMEFCVLMVRL
SPDLMDEPRRWLDDAVAQASQFLFH |
GO Analysis |
| 1 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
anatomical structure morphogenesis |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
cellular component organization |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
cell differentiation |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
multicellular organismal development |
|
| 6 |
| GO Category |
Molecular Function |
| GO Term |
binding |
|
| Presence of Splice variants |
No |
