LOC_Os06g46310

Expression Profile

RGAP LOCUS ID LOC_Os06g46310
RAP-DB ID Os06g0676000
Function metal transporter Nramp6, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 11

2) CELLO Prediction
localization PlasmaMembrane
score 4.936

3) NUCPRED Prediction
localization Non Nuclear
score 0.13

4) Y-Loc Prediction
localization Cytoplasm
score 78
confidence value 0.14
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsNRAMP3
Function assigned as per literature OsNRAMP3 is a vascular bundle-localized Mn-influx transporter involved in Mn distribution and contributes to remobilization of Mn from old to young leaves
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Arabidopsis mesophyll protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 24391861
Reference of localization https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0083990
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.071
NLS score -0.47
Protein Sequence >LOC_Os06g46310.2 protein
MSGPMQRSSQPQFISSVERNNQSNGPGTPLIDSIDVDQIVIPEKNSWKNLFSYIGPGFLVSIAYIDPGNFETDLQAGAQYKYELLWIILIASCAALIIQS
LAARLGVVTGKHLAEHCRAEYPKATNFILWILAELAVVACDIPEVIGTAFALNMLFKIPVWCGVLITGLSTLMLLLLQQYGVRKLEFLIAILVSLIATCF
LVELGYSKPNSSEVVRGLFVPELKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKVPRSVHGIKEACRFYMIESAFALTIAFLINISIISVSGAVCGSD
NLSPEDQMNCSDLDLNKASFLLKNVLGNWSSKLFAVALLASGQSSTITGTYAGQYVMQGFLDLRMTPWIRNLLTRSLAILPSLIVSIIGGSSAAGQLIII
ASMILSFELPFALVPLLKFTSSRTKMGQHTNSKAISVITWGIGSFIVVINTYFLITSFVKLLLHNGLSTVSQVFSGIFGFLGMLIYMAAILYLVFRKNRK
ATLPLLEGDSTVRIVGRDTATEGEGSLGHLPREDISSMQLPQQRTASDLD

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Biological Process
GO Term cellular process
3
GO Category Molecular Function
GO Term transporter activity
4
GO Category Cellular comBiological Processonent
GO Term plasma membrane
5
GO Category Biological Process
GO Term biological_process
6
GO Category Biological Process
GO Term cellular homeostasis
Presence of Splice variants YES