LOC_Os06g45890

Expression Profile

RGAP LOCUS ID LOC_Os06g45890
RAP-DB ID Os06g0670300
Function MYB family transcription factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 11

2) CELLO Prediction
localization Nuclear
score 4.154

3) NUCPRED Prediction
localization Non Nuclear
score 0.5

4) Y-Loc Prediction
localization Nuclear
score 97.46
confidence value 0.42
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category G2-like

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsMPH1|OsMYB45
Function assigned as per literature OsMPH1 might be involved in specific recognition and signal transduction processes related to plant height and yield formation
Subcellular localization as per literature Nucleus
Cells used for localization experiment Arabidopsis mesophyll protoplast
NUCLEAR or Not Nuclear NUCLEAR
PMID 28708834
Reference of localization http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0180825
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.117
NLS score -0.47
Protein Sequence >LOC_Os06g45890.1 protein
MGGFERRGVRQYNRSEVPRMRWTEEMHRQFVEAVECLGGQDEATPKRILQLMGVKGVSISHIKSHLQMYRSGSSNSNHPVSLQKLTSATVNNISKREFVN
SEDRCIYASGDRNTASSDKNTYTILRCGRSSMPSIEEIFRNWEQTRGRLLPWNSNVITTEQATTRASRQTTNYSKPLKQLTDCDLTLSIGQLWDDAAGSD
ADGSSTISEEVAAPSRDEAFVSSADDHFAAAAAKKESNMLTTDLNLDLTISSSWLS

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No