LOC_Os06g45820

Expression Profile

RGAP LOCUS ID LOC_Os06g45820
RAP-DB ID Os06g0669400
Function OsFtsH2 FtsH protease, homologue of AtFtsH2/8, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 12

2) CELLO Prediction
localization Chloroplast
score 3.272

3) NUCPRED Prediction
localization Non Nuclear
score 0.2

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.92
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsFtsH2
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.112
NLS score -0.47
Protein Sequence >LOC_Os06g45820.1 protein
MAPTSMSLAAKTPLPFSTLPSSGVAQRPVSVTASLEHKTNDARRKFLKLALGNLGVGLPTLLGAKRALAEEQGVSSSRMSYSRFLEYLDKDRVKKVDLFE
NGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKLREKNIDFAAHSNQEDSGSLLFNLIGNLAFPLILIGGLFLLSRRAQGGLGGPNGPGFPLGFGQSR
AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFK
KAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVSVDVPDVRGRTEILKVHGSNK
KFDTDVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGRTAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLIPR
GQARGLTWFIPMDDPTLISRQQLFARIVGGLGGRAAEEIIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSDIGPWSLMDSGAQSGDVIMRMMARNSMSE
KLAEDIDTAVKRLSDEAYEIALSQIRSNREAMDKIVEVLLEKETLSGDEFRAILSEFTEIPVENRVPPATPAALPA

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Cellular comBiological Processonent
GO Term plastid
3
GO Category Cellular comBiological Processonent
GO Term thylakoid
4
GO Category Biological Process
GO Term metabolic process
5
GO Category Biological Process
GO Term generation of precursor metabolites and energy
6
GO Category Biological Process
GO Term response to abiotic stimulus
7
GO Category Biological Process
GO Term photosynthesis
8
GO Category Biological Process
GO Term cellular process
9
GO Category Biological Process
GO Term protein metabolic process
10
GO Category Biological Process
GO Term catabolic process
11
GO Category Molecular Function
GO Term hydrolase activity
12
GO Category Molecular Function
GO Term binding
13
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
14
GO Category Biological Process
GO Term cellular component organization
Presence of Splice variants YES