LOC_Os06g44970

Expression Profile

RGAP LOCUS ID LOC_Os06g44970
RAP-DB ID Os06g0660200
Function auxin efflux carrier component, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 8

2) CELLO Prediction
localization PlasmaMembrane
score 3.852

3) NUCPRED Prediction
localization Non Nuclear
score 0.27

4) Y-Loc Prediction
localization Secreted pathw
score
confidence value 0.99
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsPIN2|LRA1
Function assigned as per literature OsPIN2 plays an important role in root gravitropic responses and determining the root system architecture in rice by affecting polar auxin transport in the root tip
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 29294052
Reference of localization https://academic.oup.com/jxb/article/69/3/385/4773865
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 3
Number of Bipartite 0
Basic residues % 0.078
NLS score 1.23
Protein Sequence >LOC_Os06g44970.1 protein
MITGRDIYDVLAAIVPLYVAMFLAYGSVRWWGIFTPDQCSGINRFVAVFAVPLLSFHFISTNDPYSMNYRFLAADSLQKLVILAALAVWHNLLSRYRRNG
GAAASLDWTITLFSLSTLPNTLVMGIPLLRAMYGDFSGSLMVQIVVLQSVIWYTLMLFLFEYRGAKALISEQFPPDVGASIASFRVDSDVVSLNGREALQ
ADAEVGRDGRVHVVIRRSASASTTGGGGGAARSGVSRAYGASNAMTPRASNLTGVEIYSLQTSREPTPRASSFNQADFYAMFSGSKMASQMASPMAQHGG
AGGRAQGLDEQVTNKFASGKAADPPSYPAPNPGMMPAPRKKELGGSNSNSNKELHMFVWSSSASPVSEANLRNAVNHAASTDFASAPPPAAVPVGGATPK
GVSGSVTPAAKNGGGELEIEDGLKSPAAGLAAKFPVSGSPYVAPRKKGGGADVPGLAEAAHPMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVS
FRWNIQMPSIIKGSISILSDAGLGMAMFSLGLFMALQPKIISCGKTVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHVAIVQAALPQGIVPFVFAKEYN
CHPQILSTAVIFGMLIALPITILYYVLLGI

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Biological Process
GO Term signal transduction
3
GO Category Biological Process
GO Term response to endogenous stimulus
4
GO Category Biological Process
GO Term cellular process
5
GO Category Biological Process
GO Term response to abiotic stimulus
6
GO Category Biological Process
GO Term tropism
7
GO Category Molecular Function
GO Term transporter activity
8
GO Category Cellular comBiological Processonent
GO Term plasma membrane
9
GO Category Biological Process
GO Term biological_process
10
GO Category Cellular comBiological Processonent
GO Term vacuole
Presence of Splice variants No