LOC_Os06g44860

Expression Profile

RGAP LOCUS ID LOC_Os06g44860
RAP-DB ID Os06g0659100
Function OsSPL10 - SBP-box gene family member, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 3.676

3) NUCPRED Prediction
localization Non Nuclear
score 0.71

4) Y-Loc Prediction
localization Nuclear
score 99.99
confidence value 0.96
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category SBP

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSPL10
Function assigned as per literature OsSPL10 negatively controls salt tolerance but positively controls trichome formation in rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment epidermal cells of Nicotiana benthamiana (tobacco) leaves
NUCLEAR or Not Nuclear NUCLEAR
PMID 31611344
Reference of localization https://www.g3journal.org/content/9/12/4107.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 4
Number of PAT7 0
Number of Bipartite 1
Basic residues % 0.087
NLS score 1.41
Protein Sequence >LOC_Os06g44860.1 protein
MMSGRMNAAGDESPFPFGAMQAPGPGAYVGFDHGAAAVAAAAAAAQRAGMLQHHHHHMYDGLDFAAAMQFGGGQDAPPHPQLLALPPSMAAPPPPPMPMP
LQMPMTMPMPGDVYPALGIVKREGGGGGQDAAAGRIGLNLGRRTYFSPGDMLAVDRLLMRSRLGGVFGLGFGGAHHQPPRCQAEGCKADLSGAKHYHRRH
KVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAKRSCRKRLAEHNRRRRKPAAAATTAVAAAKDAAAAPVAAGKKPSGGAATSYTGDNKNVVSMSA
AKSPISSNTSVISCLPEQGKHAAAAARPTALTLGGAPPHESSAPQIGAMLHHHHHHQQDHMQVSSLVHINGGGGGGSNNILSCSSVCSSALPSTATNGEV
SDQNNDNSHNNGGNNNNMHLFEVDFM

GO Analysis
1
GO Category Biological Process
GO Term flower development
2
GO Category Biological Process
GO Term multicellular organismal development
3
GO Category Biological Process
GO Term cell cycle
4
GO Category Molecular Function
GO Term DNA binding
5
GO Category Cellular comBiological Processonent
GO Term nucleus
Presence of Splice variants No