| RGAP LOCUS ID |
LOC_Os06g44840 |
| RAP-DB ID |
Os06g0658900 |
| Function |
prenyltransferase, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
6 |
2) CELLO
Prediction
|
| localization |
PlasmaMembrane |
| score |
4.96 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.08 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
8 |
| confidence value |
0.6 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsHGGT|HGGT|SGD1|RTD1 |
| Function assigned as per literature |
RTD1 is essential for tocopherol biosynthesis and plant development in rice |
| Subcellular localization as per literature |
Chloroplasts |
| Cells used for localization experiment |
Rice protoplasts |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
29427065 |
| Reference of localization |
https://link.springer.com/article/10.1007%2Fs00299-018-2266-9 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
1 |
| Number of Bipartite |
0 |
| Basic residues % |
0.092 |
| NLS score |
-0.22 |
| Protein Sequence |
>LOC_Os06g44840.1 protein
MDSLRLRPSLLAARAPGAASLPPLRRDHFLPPLCSIHRNGKRPVSLSSQRTQGPSFDQCQKFFGWKSSHHRIPHRPTSSSADASGQPLQSSAEAHDSSSI
WKPISSSLDAFYRFSRPHTVIGTALSIVSVSLLAVENLSDVSPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKVNKPTLPLASGEYSPATGVALVSA
FAAMSFGLGWAVGSQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFATAFMTFFSVVIALFK
DIPDIEGDRIFGIKSFSVRLGQKKVFWICVGLLEMAYCVAILMGATSACLWSKYATVVGHAILAAILWNRSRSIDLTSKTAITSFYMFIWKLFYAEYLLI
PLVR |
GO Analysis |
| 1 |
| GO Category |
Molecular Function |
| GO Term |
transferase activity |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
transport |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
cellular component organization |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
lipid metabolic process |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 10 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| Presence of Splice variants |
YES |
