| RGAP LOCUS ID |
LOC_Os06g44750 |
| RAP-DB ID |
Os06g0657500 |
| Function |
AP2 domain containing protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
5 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
3.609 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.44 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
99.59 |
| confidence value |
0.15 |
| Number Of Software Predicting Nucleus |
2 |
| Seed Specific |
No |
| Transcription factor category |
AP2-EREBP/ERF |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
HL6|OsGL6 |
| Function assigned as per literature |
HL6 regulates trichome formation in rice |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
Rice protoplasts |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
28965833 |
| Reference of localization |
https://www.cell.com/molecular-plant/fulltext/S1674-2052(17)30278-2?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS1674205217302782%3Fshowall%3Dtrue |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.076 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os06g44750.1 protein
MKSMTRQEFIASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVDSILNSDLPV
GGGAATRASKFPSDPSLPLPSPAMPPSEKDYWSLLALHYHHHQQQQQQQQFPASAFDTYGCSSGVNVDFTMGTSSHSGSNSNSSSSSAIWGTAAGAAMGR
QQNGGSSNKQSNSYSGNNIPYAAAAAMTSGSALYGGSTGSNGTWVASNTSTAPHFYNYLFGME |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
multicellular organismal development |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
embryo development |
|
| 3 |
| GO Category |
Molecular Function |
| GO Term |
DNA binding |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
post-embryonic development |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
anatomical structure morphogenesis |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| Presence of Splice variants |
No |
