LOC_Os06g44230

Expression Profile

RGAP LOCUS ID LOC_Os06g44230
RAP-DB ID Os06g0652000
Function DNA-directed RNA polymerase 3A, chloroplast precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 9

2) CELLO Prediction
localization Nuclear
score 1.252

3) NUCPRED Prediction
localization Non Nuclear
score 0.72

4) Y-Loc Prediction
localization Chloroplast
score 7
confidence value 0.04
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsRpoTp
Function assigned as per literature OsRpoTp may play a role in chloroplast differentiation
Subcellular localization as per literature Chloroplasts (N-terminal regions OsRpoTp was used )
Cells used for localization experiment Tobacco suspension-cultured green cells (cell line N-1)
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 15509842
Reference of localization https://academic.oup.com/pcp/article/45/9/1194/1857638
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 4
Number of Bipartite 0
Basic residues % 0.143
NLS score 1.81
Protein Sequence >LOC_Os06g44230.1 protein
MPLLLFPISPPCVPPPRPRLRRLSPPPPMAAVAPPSLSTPVTILPSVSVALPPLPPPATDDFHWLDLFAFLNSPADSYQIPVEEQEVEVEVEVEVGVERE
RERERERERERERARKAEHRRLRQRQVKAETEAWARAADEYRELEREMLDRRLAPALPYVKSLFLGWFEPLRDAIARDQEVQRRKRVKHVYAKYLLLLPA
DKVAVIVMHKMMGLLMSSKDGVASVRVVQAAHCIGEAVEREFKVQTFFQKTRKKSAGENDLALEKEQAKCRKRVKSLVRRRKLTEAQKIVQQEIELEEWG
TESQVKLGTRLIELLLDSAFVQSPADQTPESSPDIRPAFKHVLRQPIVENGRLKKKHWVIECDPLVHEGFESTARHVEIPYLPMLVTPKKWKGYDTGGYL
FLPSYIMRTHGVKDQKEAIKSVPRKQLRKVFEALDTLGSTKWRVNRRVHNAVETIWSRGGGIAGLVDKENIPLPERPETEDPDEIQKWKWSLKKAKKANR
ELHAERCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMHAHLSHLGSDLCRGVLEYAEGRPLGKSGLRWLKIHLANKYGGGIEKLSHEDKVAFVENQL
PDIFDSATNPVDGNCWWMNAEDPFQCLAACMDLSDALKSSSPQCAVSHLPIHQDGSCNGLQHYAALGRDYMGAAAVNLVPGDKPADIYSEIAARVLDVVR
EDSMEDPATNPTASLARVLVDQVDRKLVKQTVMTSVYGVTYIGARQQITKRLQEKGLITDDKLLYEVSCYATRVTLDALGQMFQSARGIMAWLGDCAKMI
ASENHPVKWTSPVGLPVVQPYKKYKNYMIRTSLQCLALRREGDAIALQRQKAAFPPNFVHSLDSSHMMMTAIACKKAGLHFAGVHDSFWVHACDVDKMNQ
ILREQFVELYSMPILENLLKEFQTSFPTLEFPPCPSQGDFDVREVLASTYFFN

GO Analysis
1
GO Category Molecular Function
GO Term transferase activity
2
GO Category Molecular Function
GO Term DNA binding
3
GO Category Molecular Function
GO Term protein binding
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Biological Process
GO Term biosynthetic process
6
GO Category Cellular comBiological Processonent
GO Term mitochondrion
Presence of Splice variants No