LOC_Os06g43120

Expression Profile

RGAP LOCUS ID LOC_Os06g43120
RAP-DB ID Os06g0638000
Function zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 4.012

3) NUCPRED Prediction
localization Nuclear
score 0.99

4) Y-Loc Prediction
localization Nuclear
score 99.99
confidence value 0.93
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category C3H

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) DCM1
Function assigned as per literature DCM1 plays an essential role in male meiotic cytokinesis by preserving callose from prematurely dissolution in rice
Subcellular localization as per literature DCM1 and OsPABNs interact in the nuclear speckles
Cells used for localization experiment Rice Protoplast
NUCLEAR or Not Nuclear NUCLEAR
PMID 3041902
Reference of localization https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1007769
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 5
Number of PAT7 6
Number of Bipartite 0
Basic residues % 0.124
NLS score 3.12
Protein Sequence >LOC_Os06g43120.1 protein
MDPPPPFDHPLHRRHYSDHHHFPPGGSGGSGGAASAAARSRYEYGGGGYESHSHHQYHLPDHHHHHHHHHPPPRVQHHHHHHHQQLPAPTPPPPPPPPLP
QHRLEPPPPHYGFPPRGHPDAYSPPPYHDPSPHHHYHRHGGDDFLPADEIRRVGGGHHHHHHHPQLQQLLPWEEAEEERRRYGGATQQLRLSPSGPRKRQ
RCAVHDADVESTSSSGPPPRRQRQQPHPDYALDDSFVDRNNAHPGYMVHEGFSIHSDSKVSRKIQMPTQMALPGSPHGTSAGYARRAPQKVAPSRVSVWH
RIEENPAMYEPSSPPPHMPKEVHVSPCKSNNVAPASKELASVISVDCRGKSADGNDGDSNTGTKKNPVKKNEKVLASVLVKPPMEPKEKEVAAKKMLKKP
DKVQKNAVHSNIRSLVSTPCPGAGAKKVKKIVIKKIVRKINGKGNQNSTPVVSEKRDGIDANACEKEEGEITTSSFEKDVISAHDPIAVSDTAGFGNAVN
DQKQKNTDFTNPSGRNAASANGSMEIPDPPNGSGSAHPGKEEVLSPKNPVDNSNASLVVEPIEVLEKSGTEHPRKEHDMSSIGSGVNDAFADANNHTQKE
VGEMNVAVAINSVRVSDAREVPRCDDSSMEESKVPKDVDANIAVCMDGVASNCDTTEVCGNEDARRECGKKLIGINDEKAFLLNNSARSSSTSDTCMTAV
EGAQKKEGIILTGSSEKSIGFLGDSVGTHRTTEFGASKDAPNEGDDMPSHPSEKDFMSLNSCGGLNYTEVSEKEDIQEKEDRVPMESIVACTSSGNEDIQ
VNEGRKPMELSEANAFSGSGDSQGKECRIPMGSSETNTSSVNHVNASNEKDFSLSEDTQKKESHRPIESCENTTFEIMHHEEAPSTEEVITGVSLGRKVA
EGPTRSNERCSGARGNSATTLKFGLACATEDNQMEDLLNNRTALNETDDPLDAEDSPVFVPPSSRNVESTYASPLYDPMEDSTSDGILNIGLGRNTTSKA
AELLDLHRDHISSENDSLIHSRGTSSVSGNREQSVPTALTLGSNIYFSSAETDDRPEERHELVVEGQQGLTVETTSKLDSPGKIEVLNGAGFISTGIQNW
LSLPPSINSMEMSGQFLNNGFTVSKGRLGLDQSMDDATSVSQDHDIAQDMDQRGSEDAFFSQDHSIRLCGSNLPHSHLLAPKESSMNGEDQSGIVLTGLH
PSSSVNVLGHYGYQTDDIPVDNLNKLPSALESSDAMDADQVSSQVCVNPDHTNDSNTENAGVESNAKQDLLSSWIEAIVSEAKKEHPPCKSTPLTVGLPD
KLLEPKDSDRKTLLETVVPSAVKSPQINFASSTLQKVAPKQVTLPSSSREPTRANQNARHRTWHRGNIASSSSSLHASQPLGLPPKLPPKKNDKAQNSYI
RKGNALIRNPSNGNHPHSSTGHDTQNKLNKPVVRRSMNFVRKADTKDLANSNISVERPKTPPLPLHTKSSCPTTLLEPLSQTLQKQHGHEAEKEDLTGQP
KSGVDNSSIKSAQKSEPSDPSKVVYVRPKSNQLVAAQRQHPIDLVNSPTDKILSLQAPIAYDLYLKKRKNQIVLSSCSPSDGLSTKETLPAENSNSEEKK
DLMIACSISGIPGVKDRPQKALQTTNNVGRFSHVWTLNGQQPQRKGFMGSSHMNAFPRILPWKRKIFCKNFRSSHMSNVSSIRIVRKLLQTRKRDMIYTV
STDGFSLRKSGVLSVGGSSLKWSRSLEKRSQKVNKEATLALAEVERRKREKRKRQSLHDKGDHQFESVTGNQLRNSRQSSSDLRKPSTCNEYVRVSKGNQ
LVRNPKNVIRMLASDKVRWSLHTVRSRLAKKQQYCQFFTRFGECKKPRGKCPYIHDRAKVTICTKFLKGLCSNTSCKLTHKVRSFFLILY

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cellular_component
2
GO Category Molecular Function
GO Term binding
3
GO Category Biological Process
GO Term biological_process
4
GO Category Molecular Function
GO Term nucleic acid binding
Presence of Splice variants YES