LOC_Os06g42700

Expression Profile

RGAP LOCUS ID LOC_Os06g42700
RAP-DB ID Os06g0633500
Function zinc finger, C3HC4 type domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 8

2) CELLO Prediction
localization Nuclear
score 1.717

3) NUCPRED Prediction
localization Non Nuclear
score 0.13

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 0.99
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCLR1
Function assigned as per literature OsCLR1 may play a role in salt and drought stress conditions as it is highly expressed under conditions of salt and drought stresses.
Subcellular localization as per literature Cytosol
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 31292649
Reference of localization https://academic.oup.com/pcp/article-abstract/60/11/2394/5530965
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.053
NLS score -0.22
Protein Sequence >LOC_Os06g42700.1 protein
MEEEIAADDLFLDAAADHHPAGFSSSSSSYFASFSEVVEEEDEERHPHPHHRLLLDDDAAGFDHDETLAAPAPAPGSPFSFASDPDPDPDIDLELRLSSR
SPPFWDCLEDDLADEEMVGGGFEWEEIADAAVPAPGAVAAGGGGGGGGGDGGLVGDGDVFGFLDEREILGAMEGLDSGDDESGFSDEPFDFGDEGDDIGD
IFRSVGWEVLPVPLDEDDFEVLPGHVADAAAGGAPPAARAAVERLQVVAVGGGGEEAAAASRGCAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNS
CPVCRYELPTDDPEYEKRRVKRRSSGDSVAQLGTPMQI

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cellular_component
2
GO Category Molecular Function
GO Term binding
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No