LOC_Os06g41990

Expression Profile

RGAP LOCUS ID LOC_Os06g41990
RAP-DB ID Os06g0625400
Function M16 domain containing zinc peptidase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 13

2) CELLO Prediction
localization Cytoplasmic
score 1.531

3) NUCPRED Prediction
localization Non Nuclear
score 0.67

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.08
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) SPP
Function assigned as per literature SPP is essential for chloroplastbiogenesis at the early growth stage and for rice root development
Subcellular localization as per literature Chloroplast
Cells used for localization experiment tobacco leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 20097911
Reference of localization https://academic.oup.com/pcp/article/51/3/475/1896071
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 4
Number of Bipartite 0
Basic residues % 0.113
NLS score 1.27
Protein Sequence >LOC_Os06g41990.1 protein
MASFPSPPLAAAAAAAPPRLAPGLPLAAAAVRRPSSLARRSSIALAAPANPLRCIHRRAVSPRLRRRTEAVGAASAAIGSLGEEREGCLSCFPRGRRRGR
PGLARFAPCALPHTYGLSSLHSGLTGAKIRRRHVLHAAGPDEPHVASPTWSETALDKHYVDQPIGKEELEGFLNTPLPSHPKLVRGQLKNGLRYLILPNK
VPANRFEAHMEVHVGSIDEEEDEQGIAHMIEHVAFLGSKKREKLLGTGARSNAYTDFHHTVFHIHSPTKTKEYGEDLLPSVLDALNEIAFHPKFSSSRVE
KERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSERFPIGLEEQIHKWDPDKIRRFHERWYYPANATLYLVGEIDDIPRAIREIEAVFEHTLPEGEAAP
MSTASPFGAMASLFAPKLPGGLAASLTGERSPAADKIKPVKRERQAIRPPVEHKWSLPGVAQDAKPPAIFQHELIQSFSINMFCKIPVNQVQTYKDLRSV
LMKRIFLSALHFRINTRYKSSNPPFTSVELDHSDSGREGCTVTTLTVTAEPQNWRSAIKVAVHEVRRLKEFGVTMGEMTRYMDALIKDSEQLAMMIDSVP
SVDNLDFIMESDALRHTVMDQLQGHESLLAVAETVTLEEVNTVGAEVLEFISDYGKPDAPLPAAIVACVPKKVHMDGVGETDFEIHPEEITDSIKAGLEE
PIYPEPELEVPKELITRSELEDLKLQRKPSFASLSKEENVVKIFDDETGIAQRRLSNGISINYKITQNEARVGVMRLIVGGGRATEDSESKGSVIVGVRT
LSEGGCVGNFSREQVELFCVNNLINCSLESNEEFIFMEFRFALRDNGMRAAFQLLHMVLEHNVWLEDAFDRATQLYLSYYRSIPKSLERSTAHKLMLAML
NHDERFVEPSPHSLQKLTLQSVKDAVMNQFVGDNMEVSIVGDFTEEEVESCVLDYLGTVSAPKSSKTQEHIEKISFLPFPSDLHFQQVYIKDTDERACAY
IAGPAPNRWGFATEGNDLFNVIRSSSGDAQVSESANTDLTERKHNDVRSHSLFFGITLSLLAEIINSRLFTTVRDSMGLTYDVSFELNLFDKLDLGWYVI
AVTSTPSKVHKAVDACKGVLRGLHSNKIVERELDRAKRTLLMKHEAETKTNAYWLGLLAHLQSSSVPRKEISCIKELTMLYESATIEDLYLAYEHLKVDE
SSLFACIGIAGAESGEETTDDELDMGLHGMGPIGGRGLSTMTRPTT

GO Analysis
1
GO Category Molecular Function
GO Term binding
2
GO Category Biological Process
GO Term protein metabolic process
3
GO Category Molecular Function
GO Term hydrolase activity
4
GO Category Molecular Function
GO Term catalytic activity
5
GO Category Cellular comBiological Processonent
GO Term mitochondrion
6
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES