LOC_Os06g41750

Expression Profile

RGAP LOCUS ID LOC_Os06g41750
RAP-DB ID Os06g0622500
Function tetratricopeptide repeat domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 6

2) CELLO Prediction
localization Nuclear
score 1.545

3) NUCPRED Prediction
localization Non Nuclear
score 0.52

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.22
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCDC27
Function assigned as per literature
Subcellular localization as per literature Nucleus when interacts with TE
Cells used for localization experiment Nicotiana benthamiana leaf cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 22434195
Reference of localization https://www.nature.com/articles/ncomms1716
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.101
NLS score -0.47
Protein Sequence >LOC_Os06g41750.1 protein
METLMVDRVHGSLRLFMHRNAVFLCERLCAQFPAETNVQLLATCYLHNNQPYAAYHILKGKKLPESRYLFAMSCFRMNLLREAEEALCPVNEPNIEVPSG
ATGHYLLGVIYRYTGRVEAAAEQFVQALTLDPLLWAAYEELCILGVAEDANECFSEATALRLQQELTSTSNVEKSNFVNENRFLSSNVSASFGDSPKQIK
QLHANTTAEVSGYPHVKSTALHMQNGAPSNLSQFDTPSPTSTQASGIAPPPLFRNMHAYQNTAGGNAPSKPKVNAPNLTLRRKYIDEAGLKKVSGRLFNQ
SSDSVPRRSARLSRDTTINSNSNISQFGGNGTDHSSGNRYHVVDEMWTDNVTSTSSSTSIVDGRYPEQEKSERVLSQDSKLAIGIRELMALLRTLGEGYR
LSCLFKCQEALEVYRKLPEAQFNTGWVLCQVGKTYFELVNYLEADHFFELAHRLSPCTLEGMDIYSTVLYHLNEEMRLSYLAQDLVSIDRLSPQAWCAVG
NCFALRKDHETALKNFQRAVQLDSRVAYAHTLCGHEYSALEDYENSIKLYRSALQVDERHYNAWYGLGVVYLRQEKFEFAEHHFRRAFQINPCSSVLMCY
LGMALHALKRNEEALEMMENAIFADKKNPLPKYQKALILLGLQKYPDALDELERLKEIAPHESSMYALMGKIYKQLNILDKAVFCFGIALDLKPPAADVA
IIKSAMEKVHLPDELMDDDDDDDEI

GO Analysis
1
GO Category Biological Process
GO Term response to endogenous stimulus
2
GO Category Biological Process
GO Term cell cycle
3
GO Category Biological Process
GO Term reproduction
4
GO Category Biological Process
GO Term anatomical structure morphogenesis
5
GO Category Biological Process
GO Term post-embryonic development
6
GO Category Biological Process
GO Term embryo development
7
GO Category Molecular Function
GO Term protein binding
8
GO Category Cellular comBiological Processonent
GO Term cytoskeleton
9
GO Category Cellular comBiological Processonent
GO Term nucleus
10
GO Category Cellular comBiological Processonent
GO Term cytoplasm
11
GO Category Biological Process
GO Term cell differentiation
12
GO Category Biological Process
GO Term cellular process
13
GO Category Molecular Function
GO Term binding
14
GO Category Biological Process
GO Term multicellular organismal development
15
GO Category Biological Process
GO Term cellular component organization
16
GO Category Biological Process
GO Term cell growth
Presence of Splice variants No