LOC_Os06g41730

Expression Profile

RGAP LOCUS ID LOC_Os06g41730
RAP-DB ID Os06g0622300
Function ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 7

2) CELLO Prediction
localization Nuclear
score 3.184

3) NUCPRED Prediction
localization Non Nuclear
score 0.35

4) Y-Loc Prediction
localization Nuclear
score 99.7
confidence value 0.98
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category ARID

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsARID3
Function assigned as per literature OsARID3 is an AT-rich Interaction Domain-containing protein which is required for shoot meristem development in rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice protoplast
NUCLEAR or Not Nuclear NUCLEAR
PMID 26121094
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/tpj.12927
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 1
Basic residues % 0.132
NLS score 0.5
Protein Sequence >LOC_Os06g41730.1 protein
MAQFRSAPVESEAEPGADGPVDEANAVEEEKSGKGEDGIEEAADTVDSVKDSAKPEGMDAKEEAVEQEGGAAADKAKDIPVTSNGKTDAGGNEVAEMKVE
KLENGDGHLKADGDSNGDNKGADGEKQLMLASAGEDVEDPVLSKLASNSFMFDYSCGGDDSGTEEEQAAFMKELERFYREKLMEFKPPKFYGEGLNCLKL
WRQVTGLGGYDQVTSCKLWRQVGESFKPPKTCTTVSWTFRNFYEKALLEYEKHKIETGEFQVAASNLTERITSESQVGIHASGSGRARRESATRAMQGWH
SQRLLGNGEIADPIIKDKGTVSVLKKDKTPKSSGSAKRKRTPTLEDDRIVPYKPDKLQNDSMVLDLGPPADWVKINVRRTKDCYEVYALVPGLLREEVHV
QSDPAGRLIVTGEPEQLDNPWGVTPFKKVISLPSRIDPHQTSAVVTLHGQLFVRAPFEQSK

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES