LOC_Os06g41050

Expression Profile

RGAP LOCUS ID LOC_Os06g41050
RAP-DB ID Os06g0613400
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 11

2) CELLO Prediction
localization Nuclear
score 3.615

3) NUCPRED Prediction
localization Nuclear
score 0.82

4) Y-Loc Prediction
localization Nuclear
score 98.74
confidence value 0.96
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCOM1
Function assigned as per literature OsCOM1 promotes homologous synapsis and recombination in rice meiosis
Subcellular localization as per literature Nucleus
Cells used for localization experiment meiocytes
NUCLEAR or Not Nuclear NUCLEAR
PMID 22507309
Reference of localization https://onlinelibrary.wiley.com/doi/full/10.1111/j.1365-313X.2012.05025.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 3
Number of Bipartite 0
Basic residues % 0.164
NLS score 0.73
Protein Sequence >LOC_Os06g41050.1 protein
MNANVLGGDVVADDFNYFSGVSTIFVANIQEVKDRVSQIELLFCSQLFPHVQAMWKAAKDAWMEREAALLSQLEELSSGKRHAEEKALQLGCSLDEMKGK
LADAERSVAGHEVEKKRLLGRLEEEIGNKDEVIRRLEREIAEKAADFSRERDAHQRLLQLVELKDKNLLLEQNKRRDAEEMALQLGNSLEDMKGNFERLI
ARHEVEKERIPGRLEEEMGKKDEVIGRLESEIAEKAADVSRERDAHQRMLQQVELKDKDLLLEQNKRKDLIEDYTKLKTLYKDLKSQYNFLVGKIGQNEG
SKSPVVNVVDRKTSGSPPSKRKLKDLVDTKKENNQAVSKTVDEKNGPASSAKAQGTHHASSVRSPFSNSRLCLPSRTTNPPPKNATSNSKTEAASSFTRP
SLHWRETRARKEPGVVDPHDDFLDTPLEAVKNMIRNPKTPEEAQALAASPPKDMDFNNSDDETQDVNIATQGQKNMPVPKQQSTISIQPPNKGFKYTEPV
RKKADRENLKGVECKQCKKFYDAVLPDGRTNGDGVDSTSMRCEHHDGVSRHRYRYAPPLTPEGFWNIGFESEM

GO Analysis
1
GO Category Biological Process
GO Term response to abiotic stimulus
2
GO Category Biological Process
GO Term response to stress
3
GO Category Biological Process
GO Term DNA metabolic process
4
GO Category Biological Process
GO Term catabolic process
5
GO Category Biological Process
GO Term cell cycle
6
GO Category Biological Process
GO Term reproduction
7
GO Category Biological Process
GO Term cellular process
Presence of Splice variants No