LOC_Os06g40360

Expression Profile

RGAP LOCUS ID LOC_Os06g40360
RAP-DB ID Os06g0605900
Function OsFBL30 - F-box domain and LRR containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 6

2) CELLO Prediction
localization PlasmaMembrane
score 1.368

3) NUCPRED Prediction
localization Non Nuclear
score 0.28

4) Y-Loc Prediction
localization Cytoplasm
score 66
confidence value 0.25
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsEBF1
Function assigned as per literature OsEBF1 is involved in ethylene signaling pathway and positively regulated brown planthopper (BPH) resistance.
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 31407341
Reference of localization https://nph.onlinelibrary.wiley.com/doi/abs/10.1111/nph.16111
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.098
NLS score -0.47
Protein Sequence >LOC_Os06g40360.1 protein
MPPFHDYRDGGVLVMEPAASAALFGGVRSRKRARVTAVPPCGFVSAAAEAVEVVEEEGLTAAKRQKQQQQQREAPSLDALPDECLFEILRRVKGARARCA
SAAVSRRWLALLGGIRSSEIKREPAAAAVPDLNQVFVDEDEEEEDEFEVPLGGGCSSERCLEGREATDVGLMAVAVADALRGSLESLVIRGSHPTRGVTD
AGISAAARGCPSLLSLALWHVPQVTDAGLAEIAAGCPSLARLDITGCPLITDKGLAAIAQGCPDLKVVTVEACPGVADEGLKAIGRCCAKLQSVNIKNCA
HVGDQGVSGLVCSAAASLAKVRLQGLSITDASLSVIGYYGKAITDLTLARLPAVGERGFWVMANALGLQKLRFMSVSSCPGVTDLALASIAKFCPSLKQL
NLKKCGQVSDGRLKDFAESAKVLESLQIEECNKVTLMGILAFLLNCSPKFKALSLVKCNGIKDICSAPAQLPLCKSLRSLTIKDCPGFTDASLAVVGMIC
PQLENVDLSGLGAVTDNGLLPLIKSSESGLVHVDLNGCENLTDATVSALVKAHGSSLARLSLEGCSRITDASLFAISEGCTDLAELDLSNCMVSDYGVAV
LASARQLKLRVLSLSGCLKVTQKSVPFLGSMSASLEGLNLQFNFIGNHNIASLEKQLWWCDILA

GO Analysis
1
GO Category Biological Process
GO Term signal transduction
2
GO Category Biological Process
GO Term response to endogenous stimulus
3
GO Category Cellular comBiological Processonent
GO Term nucleus
4
GO Category Biological Process
GO Term protein metabolic process
5
GO Category Biological Process
GO Term catabolic process
6
GO Category Biological Process
GO Term cellular process
7
GO Category Molecular Function
GO Term protein binding
8
GO Category Biological Process
GO Term protein modification process
9
GO Category Molecular Function
GO Term catalytic activity
Presence of Splice variants YES