LOC_Os06g40120

Expression Profile

RGAP LOCUS ID LOC_Os06g40120
RAP-DB ID Os06g0603600
Function SPX domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto_Nuclear
score 4.16667

2) CELLO Prediction
localization Cytoplasmic
score 2.378

3) NUCPRED Prediction
localization Non Nuclear
score 0.47

4) Y-Loc Prediction
localization Nuclear
score 98.14
confidence value 0.77
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSPX1
Function assigned as per literature OsSPX1 may be involved in Pi-starvation signaling in rice.
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 19566645
Reference of localization https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1744-7909.2009.00834.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.142
NLS score -0.47
Protein Sequence >LOC_Os06g40120.1 protein
MKFGKSLSSQIVETLPEWRDKFLSYKDLKKRLKLIGGGGGGEERQAKRARVAADGGEEEAAAAAMTPEEAGFMRLLEAELDKFNSFFVEKEEEYIIRQKE
LQDRVARAAGRESKEELMRVRKEIVDFHGEMVLLENYSALNYTGLVKILKKYDKRTGALIRLPFIQKVLQQPFFTTDLLYKLVKQCEAMLDQLLPSNELS
VSSEDGRGDSTNEDKPSNPSSSLVNGGTIPELDEIEYMESMYMKGTVAALRSLKEIRSGSSTVSAFSLPPLQGDSSPEEQQELWNKIPVIEQAAK

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Biological Process
GO Term response to extracellular stimulus
3
GO Category Biological Process
GO Term cell communication
4
GO Category Biological Process
GO Term response to stress
5
GO Category Cellular comBiological Processonent
GO Term nucleus
Presence of Splice variants No