LOC_Os06g40080

Expression Profile

RGAP LOCUS ID LOC_Os06g40080
RAP-DB ID Os06g0603000
Function heme oxygenase 1, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 14

2) CELLO Prediction
localization Chloroplast
score 2.705

3) NUCPRED Prediction
localization Non Nuclear
score 0.04

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.77
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) Se5|OsHY1|OsHO1|YGL2|YE1|PE-1
Function assigned as per literature Se5 improves plant tolerance to oxidative stress
Subcellular localization as per literature Chloroplasts
Cells used for localization experiment Arabidopsis protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 22829206
Reference of localization https://link.springer.com/article/10.1007%2Fs11103-012-9945-7
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.121
NLS score -0.47
Protein Sequence >LOC_Os06g40080.1 protein
MAPAAASLTAPNALAATSLPFLHGRKSGGGGVSVHAGAPSPSRAVAVVARRLWGSASSSRRMVVAAATAAEMAPAASGEEGKPFVEEMRAVAMRLHTKDQ
AKEGEKEPQAPPVARWEPSVDGYLRFLVDSKLVFETLETIVDRAAVPWYAEFRNTGLERSEQLKKDLEWFKEQGHTIPEPSAPGTTYASYLEELAEKDSQ
AFICHFYNVYFAHTAGGRMIGKKVSENILNKKELEFYKWEGNLSQLLQNVRNKLNEVASSWTREEKDHCLDETEKSFSYSGDLLRHIFT

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Molecular Function
GO Term binding
4
GO Category Biological Process
GO Term metabolic process
5
GO Category Biological Process
GO Term multicellular organismal development
6
GO Category Biological Process
GO Term growth
7
GO Category Biological Process
GO Term response to external stimulus
8
GO Category Biological Process
GO Term signal transduction
9
GO Category Biological Process
GO Term response to abiotic stimulus
10
GO Category Biological Process
GO Term catabolic process
11
GO Category Molecular Function
GO Term catalytic activity
12
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No