LOC_Os06g39960

Expression Profile

RGAP LOCUS ID LOC_Os06g39960
RAP-DB ID Os06g0601500
Function bZIP transcription factor domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 4.388

3) NUCPRED Prediction
localization Non Nuclear
score 0.59

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 0.99
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category bZIP

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsbZIP48
Function assigned as per literature Regulation of plant development
Subcellular localization as per literature Nucleus
Cells used for localization experiment onion (Allium cepa) peel cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 28775143
Reference of localization http://www.plantphysiol.org/content/176/2/1262.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 3
Basic residues % 0.169
NLS score 1.17
Protein Sequence >LOC_Os06g39960.1 protein
MQRDHRRSSPPAAASSSERSSDSAPNTDDGKEGVDSDDEEIVGRVPEFGLALPGTSTSGRGSVRVAGDAAATAAGTSSSSPAAQAGVAGSSSSGRRRGRS
PADKEHRRLKRLLRNRVSAQQARERKKAYMSELEARVKDLERSNSELEERLSTLQNENQMLRQVLKNTTANRRGPDSSAGGDS

GO Analysis
1
GO Category Biological Process
GO Term signal transduction
2
GO Category Biological Process
GO Term response to abiotic stimulus
3
GO Category Molecular Function
GO Term DNA binding
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Biological Process
GO Term post-embryonic development
7
GO Category Molecular Function
GO Term protein binding
8
GO Category Biological Process
GO Term cellular process
9
GO Category Biological Process
GO Term secondary metabolic process
10
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
11
GO Category Biological Process
GO Term response to endogenous stimulus
12
GO Category Cellular comBiological Processonent
GO Term nucleus
13
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No