LOC_Os06g39640

Expression Profile

RGAP LOCUS ID LOC_Os06g39640
RAP-DB ID Os06g0597400
Function PINHEAD, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 3

2) CELLO Prediction
localization Nuclear
score 1.877

3) NUCPRED Prediction
localization Non Nuclear
score 0.49

4) Y-Loc Prediction
localization Nuclear
score 87.55
confidence value 0.22
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsPNH1
Function assigned as per literature OsPNH1 regulates leaf development and maintenance of the shoot apical meristem in rice
Subcellular localization as per literature Cytoplasm
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 12000455
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1046/j.1365-313X.2002.01279.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.131
NLS score -0.22
Protein Sequence >LOC_Os06g39640.1 protein
MAPPRHQPAAGKAGGGRGHGHGHGHGGGGGGPAARKQPLQSSMAQPKAETAAATAAVAPPEGGKKCGGGGGRRRGGRGRGGRAGAGPGPGLAAAPAVVVA
PAARAVIGPPVASKGLSFCRRPGFGTVGARCVVKANHFLAELPDKDLTQYDVKITPEVSSRSVNRAIMSELVRLYHDSDLGGRLPAYDGRKNLYTAGTLP
FDAREFVVRLTDDDDGTGVPPREREYRVAIKFAARADLHHLRQFIAGRQADAPQEALQVLDIVLRELANRRYVSIGRSFYSPDIRKPQRLGDGLQSWCGF
YQSIRPTQMGLSLNIDMSSTAFIEPLPVIEFVAQILGKDVISRPLSDANRIKIKKALRGVKVEVTHRGNVRRKYRISGLTTQPTHELIFPIDDQMNMKSV
VEYFKEMYGFTIQHPHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITSLLKVTCRRPREQEMDILQTVQQNGYEQDPYAKEFGINISEKLTSV
EARVLPAPWLKYHDTGKEKECLPQVGQWNMVNKKVINGCKVNHWACINFSRSVQETTARGFCQELAQMCQISGMEFNSEPVIPIYSARPDQVEKALKHVY
NMSLNKLKGKELELLLAILPDNNGSLYGDIKRICETDLGLISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISWRIPLVSDIPTIIFGADVT
HPETGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPQRGTVTGGMIRELLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELD
AIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHKDRSSTDKSGNILPGTVVDSKICHPSEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLT
NNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMSENQTTSKSSTGTNGTSVKPLPAVKEKVKRVMFYC

GO Analysis
1
GO Category Biological Process
GO Term translation
2
GO Category Biological Process
GO Term reproduction
3
GO Category Biological Process
GO Term anatomical structure morphogenesis
4
GO Category Biological Process
GO Term post-embryonic development
5
GO Category Biological Process
GO Term embryo development
6
GO Category Molecular Function
GO Term translation factor activity, nucleic acid binding
7
GO Category Molecular Function
GO Term RNA binding
8
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
9
GO Category Biological Process
GO Term cell differentiation
10
GO Category Cellular comBiological Processonent
GO Term cytoplasm
Presence of Splice variants No